Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaccataatgcactatgcttttactttggttgctagtttttatactttcattttgacatttttttttaatttgtttgtttctattttgttcccgttctatgatgatagTTTGACTGTGGAATTCATCCCGCATACTCGGGCATGGCTGCTTTGCCATACTTTGATGAGATTGATCCTTCGACCATTGATGTCCTTTTGGTGACACA

Basic information

species Vitis vinifera
transcript Vv12s0035g00190.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g00190.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G61010.1 (Arabidopsis thaliana), 3'ss of exon 1
gtagaccataatgcactatgcttttactttggttgctagtttttatactttcattttgacatttttttttaatttgtttgtttctattttgttcccgttctatgatgatagTTTGACTGTGGAATTCATCCCGCATACTCGGGCATGGCTGCTTTGCCATACTTTGATGAGATTGATCCTTCGACCATTGATGTCCTTTTGGTGACACA
                |  |||| | | ||   | ||| |      |  |   ||||||  ||| || ||      | |  || || ||  ||   ||| | |  ||  ||||||| ||||| |||||||| || ||||||||||||||||| ||||| ||||| |||||||||||||||||  ||||||||||||| ||| | || ||
---------------gtcagcttctccgttttgttctaatcaa-gcaaatgtgttttgat-tttgttgttggggcatgt-cttatagttgattttggttgtgttgtg-cagTTTGATTGTGGGATTCATCCTGCGTACTCGGGCATGGCTGCGTTGCCTTACTTCGATGAGATTGATCCTTCTTCCATTGATGTCCTCTTGATTACTCA

upper sequence: Vv12s0035g00190.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S23_196V6.1 (Physcomitrella patens), 3'ss of exon 1
gtagaccataatgcactatgcttttactttggttgctagtttttatactttcattttgacatttttttttaatttgtttgtttctattttgttcccgttctatgatgatagTTTGACTGTGGAATTCATCCCGCATACTCGGGCATGGCTGCTTTGCCATACTTTGATGAGATTGATCCTTCGACCATTGATGTCCTTTTGGTGACACA
         ||||   | |    ||  |||| | |  |||      |   |    ||  | |     |   |  |  |  | | | |  ||   |  || || |     |||||||||||||||| ||||| |  ||||| |||||||| ||  |||| ||||| |||||||| ||||||   | ||| |||||  |  | ||||| ||
---------aatgttttgtagagttgatttgctag--agtgagaggaacctgtagttcgcttcccgatcagagatagtgctgtgtgtcatgccgcttttgtacgtgtgcagTTTGACTGTGGAATCCATCCTGGCTACTCTGGCATGGCAGCGCTGCCCTACTTCGATGAGATAGATCCTATCAGCATAGATGTTTTACTCGTGACGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacatttttttttaatttgtttgtttctattttgttcccgttctatgatgatagTTTGACTGTGGAATTCATCCCGCATACTCGGGCATGGCTGCTTTGCCATACTTTGATGAGATTGATCCTTCGACCATTGATGTCCTTTTGGTGACACA
          ttttaat  putative branch site (score: 3)
     tttttttttaatttgt  TA-rich tract