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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataccataatgcattattcgtttattttggttgctagtttttatactttgttttcgatattttttataatttgtttgtttctattttgttcctgttctgtgatgatagTTTGACTGTGGAATTCATCCCGCATACTCAGGCATGGCTGCTTTGCCATACTTTGATGAGATTGATCCTTCAACCATTGATGTCCTTTTGGTGACACA

Basic information

species Vitis vinifera
transcript Vv12s0035g00030.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g00030.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G61010.1 (Arabidopsis thaliana), 3'ss of exon 1
gtataccataatgcattattcgtttattttggttgctagtttttatactttgttttcgatattttttataatttgtttgtttctattttgttcctgttctgtgatgatagTTTGACTGTGGAATTCATCCCGCATACTCAGGCATGGCTGCTTTGCCATACTTTGATGAGATTGATCCTTCAACCATTGATGTCCTTTTGGTGACACA
               | |     |   ||| ||| ||| |      | | |||||| ||| || ||  |      | |  || || ||  ||   ||| |||  ||  ||||||| ||||| |||||||| || ||||| ||||||||||| ||||| ||||| |||||||||||||||||  ||||||||||||| ||| | || ||
--------------gtcagcttctccgttttgtt-ctaatcaagcaaatgtgtttt-gattttgttgttggggcatgt-cttatagttgattttggttgtgttgtg-cagTTTGATTGTGGGATTCATCCTGCGTACTCGGGCATGGCTGCGTTGCCTTACTTCGATGAGATTGATCCTTCTTCCATTGATGTCCTCTTGATTACTCA

upper sequence: Vv12s0035g00030.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S23_196V6.1 (Physcomitrella patens), 3'ss of exon 1
gtataccataatgcattattcgtttattttggttgctagtttttatactttgttttcgatattttttataatttgtttgtttctattttgttcctgttctgtgatgatagTTTGACTGTGGAATTCATCCCGCATACTCAGGCATGGCTGCTTTGCCATACTTTGATGAGATTGATCCTTCAACCATTGATGTCCTTTTGGTGACACA
    |   |  || |   ||  |||  |   ||     |    | || || | || |        | | |  | ||   | | | |  ||   || || |  |     |||||||||||||||| ||||| |  ||||| |||||||| ||  |||| ||||| |||||||| ||||||   | ||| |||||  |  | ||||| ||
----aatgttttgtagagttgatttgctagagtgagaggaacctgtagttcgcttcccga-----tcagagatagtgc-tgtgtgtcatgccgcttttgtacgtgtgcagTTTGACTGTGGAATCCATCCTGGCTACTCTGGCATGGCAGCGCTGCCCTACTTCGATGAGATAGATCCTATCAGCATAGATGTTTTACTCGTGACGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgatattttttataatttgtttgtttctattttgttcctgttctgtgatgatagTTTGACTGTGGAATTCATCCCGCATACTCAGGCATGGCTGCTTTGCCATACTTTGATGAGATTGATCCTTCAACCATTGATGTCCTTTTGGTGACACA
     attttttataatttgt  TA-rich tract