1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcaggctaatgaagaaatgaatcttttacatgcttataagctacttgtcatctattcacaatttatttttctaatgttgtgtttactgatgtttctctagGAATGTGTAAACCCTTTTGATTACTGTGATATTGTTACCTCAACAACTCACAAAAGTCTACGGGGTCCCAGGGGAGGCATCATTTTTTATAGAAAGGGTA
species | Vitis vinifera |
transcript | Vv12s0034g02380.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGTGCTTTTGTGCGACATGGCTCAAATTAGCGGACTTGTTGCGGCTAAG GAATGTGTAAACCCTTTTGATTACTGTGATATTGTTACCTCAACAACTCACEST: gi|352778343|gb|FQ465653.1|FQ465653
genomic: CAGTGCTTTTGTGCGACATGGCTCAAATTAGCGGACTTGTTGCGGCTAAGgtgtgaattt ... gtttctctagGAATGTGTAAACCCTTTTGATTACTGTGATATTGTTACCTCAACAACTCAC
EST: CAGTGCTTTTGTGCGACATGGCTCAAATTAACGGACTTGTTGCGGCTAAG GAATCTGTAAACCCTTTTTGATT
genomic: CAGTGCTTTTGTGCGACATGGCTCAAATTAGCGGACTTGTTGCGGCTAAGgtgtgaattt ... gtttctctagGAATGTGTAAACCCTTTT-GATT
tgtcatctattcacaatttatttttctaatgttgtgtttactgatgtttctctagGAATGTGTAAACCCTTTTGATTACTGTGATATTGTTACCTCAACAACTCACAAAAGTCTACGGGGTCCCAGGGGAGGCATCATTTTTTATAGAAAGGGTA
tactgat putative branch site (score: 2)
tgtttctct CT-rich tract
tattcacaatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaggctaatgaagaaatgaatcttttacatgcttataagctacttgtcatctattcacaatttatttttctaatgttgtgtttactgatgtttctctagGAATGTGTAAACCCTTTTGATTACTGTGATATTGTTACCTCAACAACTCACAAAAGTCTACGGGGTCCCAGGGGAGGCATCATTTTTTATAGAAAGGGTA
-caggcta
- - - - - gaagaaa
- - - - - - - - - - - - - -acatgct
- - - - - - - - - - - - - - - - - - - - ctacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - tattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtg