Sequence
atgc intronic sequence ATGC exonic sequence...gtggtgtccttggccatgcatccatgcagttgtgagcgagcccttgaagaagttggcccccctactcctctaagatgctgacagcgctcctaggtttgagAAAAAAAAAAAAAAAAAAAAAAAACCTTGCTCCACAAAAGGGTCTACAACGATTTTCAAAATTCTCAAACCGAATTGAACTTTTTTTATTATTGAAAACC
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaagaagttggcccccctactcctctaagatgctgacagcgctcctaggtttgagAAAAAAAAAAAAAAAAAAAAAAAACCTTGCTCCACAAAAGGGTCTACAACGATTTTCAAAATTCTCAAACCGAATTGAACTTTTTTTATTATTGAAAACC
tgctgac putative branch site (score: 2)
cgctcct putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtggtgtccttggccatgcatccatgcagttgtgagcgagcccttgaagaagttggcccccctactcctctaagatgctgacagcgctcctaggtttgagAAAAAAAAAAAAAAAAAAAAAAAACCTTGCTCCACAAAAGGGTCTACAACGATTTTCAAAATTCTCAAACCGAATTGAACTTTTTTTATTATTGAAAACC
- - - tccttgg
- - - - - - -ccatgca
- - - - - - - - - - - - - - - - - - - - - - -gaagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcgctcc