Sequence
atgc intronic sequence ATGC exonic sequence...tcctataatatctaataataggaggtttccaaatgagaagtttatttgcttcattatgcaactattgggtttcatatattttctttatgcaatacctcagGTGGTCACAAGATAAAGAATGGGAAACCTGTGGTCAGAGTTCTGATTTTGGGTGGAAGCAAATTGCTGAACCTGTGATGAAGTTGTACACTGAGACTACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g01670.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G42820.1 (Glycine max), 3'ss of exon 2
---tcctataatatctaataataggaggtttccaaatgagaagtttatttgcttcattatgcaactattgggtttcatatatttt-ctttatgcaatacctcagGTGGTCACAAGATAAAGAATGGGAAACCTGTGGTCAGAGTTCTGATTTTGGGTGGAAGCAAATTGCTGAACCTGTGATGAAGTTGTACACTGAGACTACT
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gagacccctgacgttgccttcttacagtatcgccaggaagaaattcctgttgaatggtattttatttctgaaa---atgtttttcacttcctcctgtat-tcagATGGTCTCACGGTGGAGAATGGGAAAACTGTGGTAAGAGCTCCGACTTTGGATGGATGCAGATTGCTGAACCTGTAATGAAACAATATACAGAGGCGACT
upper sequence: Vv12s0028g01670.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G15500.1 (Glycine max), 3'ss of exon 1
---tcctataatatctaataataggaggtttccaaatgagaagtttatttgcttcattatgcaactattgggtttcatatatttt-ctttatgcaatacctcagGTGGTCACAAGATAAAGAATGGGAAACCTGTGGTCAGAGTTCTGATTTTGGGTGGAAGCAAATTGCTGAACCTGTGATGAAGTTGTACACTGAGACTACT
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gagactgctgacattggcttctgacagtcatgccaggaagaaattcttgttgaatggtattttatttctgaaa---atgtttttcactacctcctgtat-tcagATGGTCCCACAATCGAGAATGGGAAAATTGTGGTAAGAGCTCCGACTTTGGATGGATGCAGATTGCTGAACCTGTAATGAAACTCTATACAGAGGCGACT
upper sequence: Vv12s0028g01670.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G06410.1 (Arabidopsis thaliana), 3'ss of exon 2
---------tcctataatatctaataataggaggtttccaaatgagaagtttatttgcttcattatgcaactattgggtttcatatattttctttatgcaatacctcagGTGGTCACAAGATAAAGAATGGGAAACCTGTGGTCAGAGTTCTGATTTTGGGTGGAAGCAAATTGCTGAACCTGTGATGAAGTTGTACACTGAGACTACT
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gtacttttcttctctacttttta-tgaccacttgtttaaaaatataaaattctcctacttaa--gggttagtaacatgccttgtgtctttttctta------------gGTGGTCAGGCAGTGAAGAATGGGAGACATGTGGGCAGAGCTCTGATTTTGGGTGGATGCAGATCGTGGAACCTGTAATGAAGCAGTACACTGAATCGACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161708158|gb|FC057827.1|FC057827EST: TCCCCCTGCAGGAAGCTTGGACTTGCAGCAGAACATGGTTACTTCTTAAG GTGGTCACAAGATAAAGAATGGGAAACCTGTGGTCAGAGTTCTGATTTTGG
genomic: TCCCCCTGCAGGAAGCTTGGACTTGCAGCAGAACATGGTTACTTCTTAAGgtatgtgttc ... aatacctcagGTGGTCACAAGATAAAGAATGGGAAACCTGTGGTCAGAGTTCTGATTTTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgcttcattatgcaactattgggtttcatatattttctttatgcaatacctcagGTGGTCACAAGATAAAGAATGGGAAACCTGTGGTCAGAGTTCTGATTTTGGGTGGAAGCAAATTGCTGAACCTGTGATGAAGTTGTACACTGAGACTACT
atatattttctttatg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcctataatatctaataataggaggtttccaaatgagaagtttatttgcttcattatgcaactattgggtttcatatattttctttatgcaatacctcagGTGGTCACAAGATAAAGAATGGGAAACCTGTGGTCAGAGTTCTGATTTTGGGTGGAAGCAAATTGCTGAACCTGTGATGAAGTTGTACACTGAGACTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - aatagga
- - - - - - - - - - - - - - ccaaatg
- - - - - - - - - - - - - - - - - - - - - - - tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaacta