1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttatttatgaaaccctagagcttgaagatctttgaagatcaaagttagactgataaattgacttttaataaacacaatctttaattcttttttatgcagCTTCAATGGAATTGATTTTTTGAGAAGGAATAGAGGGAAGAGGATCATGTTTGTGGGGGACTCACTGAGCTTGAATCAGTGGCAGTCACTCACATGCATG
species | Vitis vinifera |
transcript | Vv12s0028g01360.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGACTCTATCTCAAGCTCAGATGGCAGCCCACTTCATGCAATTTACCAAG CTTCAATGGAATTGATTTTTTGAGAAGGAATAGAGGGAAGAGGATCATGTTEST: gi|28963567|gb|CB342600.1|CB342600
genomic: AAACTCTATCTCAAGCTCAGATGGCAGCCCACTTCATGCAATTTACCAAGgtatgcttcc ... ttttatgcagCTTCAATGGAATTGATTTTTTGAGAAGGAATAGAGGGAAGAGGATCATGTT
EST: AAACTCTATCTGAAGCTCAGATGGCAGCCCACTTCATGCAATTTACCAAG CTTCAATGGAATTGATTTTTTGAGAAGGAATAGAGGGAAGAGGATCATGTT
genomic: AAACTCTATCTCAAGCTCAGATGGCAGCCCACTTCATGCAATTTACCAAGgtatgcttcc ... ttttatgcagCTTCAATGGAATTGATTTTTTGAGAAGGAATAGAGGGAAGAGGATCATGTT
ttagactgataaattgacttttaataaacacaatctttaattcttttttatgcagCTTCAATGGAATTGATTTTTTGAGAAGGAATAGAGGGAAGAGGATCATGTTTGTGGGGGACTCACTGAGCTTGAATCAGTGGCAGTCACTCACATGCATG
tctttaattctttttt CT-rich tract
acttttaataaacaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatttatgaaaccctagagcttgaagatctttgaagatcaaagttagactgataaattgacttttaataaacacaatctttaattcttttttatgcagCTTCAATGGAATTGATTTTTTGAGAAGGAATAGAGGGAAGAGGATCATGTTTGTGGGGGACTCACTGAGCTTGAATCAGTGGCAGTCACTCACATGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - aaaccct
- - - - - - - - - gagcttg
- - - - - - - - - - - - - - - - - -aagatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaatc