1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtgtgtgtgcgagttggtaccaataactattaataaattttgctttgttatccatttaaggtgccttattatttaatgaaacaaattttgatgctgcagATATGAGGATGAACCTCCAGAGCCTGAGATTGAA
species | Vitis vinifera |
transcript | Vv12s0028g01210.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ttgttatccatttaaggtgccttattatttaatgaaacaaattttgatgctgcagATATGAGGATGAACCTCCAGAGCCTGAGATTGAA
ttttgat putative branch site (score: 4)
ttattatttaatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgtgtgtgcgagttggtaccaataactattaataaattttgctttgttatccatttaaggtgccttattatttaatgaaacaaattttgatgctgcagATATGAGGATGAACCTCCAGAGCCTGAGATTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
-gtgtgtg
- - - - - -gagttgg
- - - - - - - - - - -caataac
- - - - - - - - - - - - - - - - aataaat
- - - - - - - - - - - - - - - - - - - - - - - - - - ccattta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa