1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggatgtgcatttaaagattcttttatcaaagtgttgaagacttgtagttcatctctatggcctgatttccagaatctgaattcaatctcctgtcttgtagCTCTTTGTTATGCAAATATTGAAAGGCAGCAAGCGACATCACCATCTGTTATCGTCATAGGTGCTGGTATGGCAGGCATTGCAGCTGCTCGTGCCCTTCA
species | Vitis vinifera |
transcript | Vv12s0028g01120.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCAGAGAATGGAGTCGTCCGAGAGAAGTAATCGCCAGTTACGCAGAG CTCTTTGTTATGCAAATATTGAAAGGCAGCAAGCGACATCACCATCTGTTAEST: gi|30303658|gb|CB980452.1|CB980452
genomic: TCGCCAGAGAATGGAGTCGTCCGAGAGAAGTAATCGCCAGTTACGCAGAGgttggctaat ... tgtcttgtagCTCTTTGTTATGCAAATATTGAAAGGCAGCAAGCGACATCACCATCTGTTA
EST: TCGCCAGAGAATGGAGTCGTCCGAGAGAAGTAATCGCCAGTTACGCAGAG CTCTTTGTTATGCAAATATTGAAAGGCAGCAAGCGACATCACCATCTGTTA
genomic: TCGCCAGAGAATGGAGTCGTCCGAGAGAAGTAATCGCCAGTTACGCAGAGgttggctaat ... tgtcttgtagCTCTTTGTTATGCAAATATTGAAAGGCAGCAAGCGACATCACCATCTGTTA
agttcatctctatggcctgatttccagaatctgaattcaatctcctgtcttgtagCTCTTTGTTATGCAAATATTGAAAGGCAGCAAGCGACATCACCATCTGTTATCGTCATAGGTGCTGGTATGGCAGGCATTGCAGCTGCTCGTGCCCTTCA
gcctgat putative branch site (score: 4)
tctcctgtctt putative PPT
aattcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatgtgcatttaaagattcttttatcaaagtgttgaagacttgtagttcatctctatggcctgatttccagaatctgaattcaatctcctgtcttgtagCTCTTTGTTATGCAAATATTGAAAGGCAGCAAGCGACATCACCATCTGTTATCGTCATAGGTGCTGGTATGGCAGGCATTGCAGCTGCTCGTGCCCTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
ggatgtg
- - - - - - - - - - - - - - - - - tgaagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatctc