Sequence
atgc intronic sequence ATGC exonic sequence...ttatcatttttcaagcattctacatacccaccaaggaaattttggtttatatctctgtgctgcacacatatactgacatttttttttgataatgtttcagGAATAAATCGAAGAAGAAAGGAGAGAAACGGCCAAAGGAACCACGGTTTGCTTTCATGACTAAGAGCGAGATCGATCATCTTGAGGATGGATACAGATGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g00270.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G45530.1 (Glycine max), 3'ss of exon 1
-----ttatcattt--ttcaagcattctacatacccaccaaggaaattttggtttatatctctgtgctgcacacatatactgacatttttttttgataatgtttcagGAATAAATCGAAGAAGAAAGGAGAGAAACGGCCAAAGGAACCACGGTTTGCTTTCATGACTAAGAGCGAGATCGATCATCTTGAGGATGGATACAGATGG---
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aatgaaaggcacttaaccctaaaataattgttattggtttggtgagttttatctgccatattcttgcggtgaatttg-actgatgtttt------ggagcgtttcagGAACAAACCCAAAAAGAAAG---AGAAAAAGCCAAGGGAGCCTCGTTTTGCCTTCTTGACTAAAAGTGAGATCGATCATCTTGAAGATGGATACAGATGGAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatatctctgtgctgcacacatatactgacatttttttttgataatgtttcagGAATAAATCGAAGAAGAAAGGAGAGAAACGGCCAAAGGAACCACGGTTTGCTTTCATGACTAAGAGCGAGATCGATCATCTTGAGGATGGATACAGATGG
acatttttttttgata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatcatttttcaagcattctacatacccaccaaggaaattttggtttatatctctgtgctgcacacatatactgacatttttttttgataatgtttcagGAATAAATCGAAGAAGAAAGGAGAGAAACGGCCAAAGGAACCACGGTTTGCTTTCATGACTAAGAGCGAGATCGATCATCTTGAGGATGGATACAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - tcaagca
- - - - - - - - - - - - - cccacca
- - - - - - - - - - - - - - - - -aggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - -tctgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacacat