Sequence
atgc intronic sequence ATGC exonic sequence...atttagtagacaggtttttagaagataggttctatttccgagtttcctttttaagctgtaaatgttttaacttttttgcttttgtcttatctgttgatagCTTCAACTGATGATGGAAAGTTTCTTCTTGCTGCATGGAATTGTAGACGTCCTACTTGCATAGACGATATCATCTCTCTTAATACTGATGATGTTTAGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g00190.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G47900.3 (Arabidopsis thaliana), 3'ss of exon 2
atttagtagacaggtttttagaagataggttctatttccgagtttcctttttaagctgtaaatgttttaacttttttgcttttgtcttatctgttgatagCTTCAACTGATGATGGAAAGTTTCTTCTTGCTGCATGGAATTGTAGACGTCCTACTTGCATAGACGATATCATCTCTCTTAATACTGATGATGTTTAGAA
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gtgaaactaacagatgcttcttcttttctctttgcatacctaatctctttctgaat----aacactcaaaggttt--actttt-tctggtccagCAGCAGCTTCAAATGATGATGGAAAGTTCCTTCTTGCTGCCAAGAGGTTTCGGAGGCCAACTTGCACTGACTACATCATCTCCTTAAACTGCGATGATGT------
upper sequence: Vv12s0028g00190.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G47900.2 (Arabidopsis thaliana), 3'ss of exon 3
atttagtagacaggtttttagaagataggttctatttccgagtttcctttttaagctgtaaatgttttaacttttttgcttttgtcttatctgttgatagCTTCAACTGATGATGGAAAGTTTCTTCTTGCTGCATGGAATTGTAGACGTCCTACTTGCATAGACGATATCATCTCTCTTAATACTGATGATGTTTAGAA
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gtgaaactaacagatgcttcttcttttctctttgcatacctaatctctttctgaat----aacactcaaaggttt--actttt-tctggtccagcagCAGCTTCAAATGATGATGGAAAGTTCCTTCTTGCTGCCAAGAGGTTTCGGAGGCCAACTTGCACTGACTACATCATCTCCTTAAACTGCGATGATGTCTC--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctttttaagctgtaaatgttttaacttttttgcttttgtcttatctgttgatagCTTCAACTGATGATGGAAAGTTTCTTCTTGCTGCATGGAATTGTAGACGTCCTACTTGCATAGACGATATCATCTCTCTTAATACTGATGATGTTTAGAA
ttttaac putative branch site (score: 2)
cttttttgcttttgtc CT-rich tract
tgtaaatgttttaact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atttagtagacaggtttttagaagataggttctatttccgagtttcctttttaagctgtaaatgttttaacttttttgcttttgtcttatctgttgatagCTTCAACTGATGATGGAAAGTTTCTTCTTGCTGCATGGAATTGTAGACGTCCTACTTGCATAGACGATATCATCTCTCTTAATACTGATGATGTTTAGAA
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