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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctttttcagacgttgtgtctcattcgtttttgaatttgatatgtaaaattgtatgtggccctgatgttctctcggtgctcaaaattagATGCGCACTGCTCGGTGCTGGTTTTGCTGGGCTCTCTGTGGCTTGGCACTTGTTGCAG

Basic information

species Vitis vinifera
transcript Vv11s0149g00140.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71864133|gb|DT013188.1|DT013188
EST:     GGAACCACTTCATCAGTGCTACTGTCTTCTCCCTCGCAGCGACCTGTCAG                         ATGCGCACTGCTCGGTGCTGGTTTTGCTGGGCTCTCTGTGGCTTGGCACTT
genomic: GGAACCACTTCATCAGTGCTACTGTCTTCTCCCTCGCAGCGTCCTGTCAGgtctttttca ... tcaaaattagATGCGCACTGCTCGGTGCTGGTTTTGCTGGGCTCTCTGTGGCTTGGCACTT
EST: gi|71862946|gb|DT012001.1|DT012001
EST:     GGAACCACTTCATCAGTGCTACTGTCTTCTCCCTCGCAGCGACCTGTCAG                         ATGCGCACTGCTCGGTGCTGGTTTTGCTGGGCTCTCTGTGGCTTGGCACTT
genomic: GGAACCACTTCATCAGTGCTACTGTCTTCTCCCTCGCAGCGTCCTGTCAGgtctttttca ... tcaaaattagATGCGCACTGCTCGGTGCTGGTTTTGCTGGGCTCTCTGTGGCTTGGCACTT
EST: gi|71862783|gb|DT011838.1|DT011838
EST:     GGAACCACTTCATCAGTGCTACTGTCTTCTCCCTCGCAGCGACCTGTCAG                         ATGCGCACTGCTCGGTGCTGGTTTTGCTGGGCTCTCTGCGGCTTGGCACTT
genomic: GGAACCACTTCATCAGTGCTACTGTCTTCTCCCTCGCAGCGTCCTGTCAGgtctttttca ... tcaaaattagATGCGCACTGCTCGGTGCTGGTTTTGCTGGGCTCTCTGTGGCTTGGCACTT
EST: gi|71864041|gb|DT013096.1|DT013096
EST:     GGAACCACTTCATCAGTGCTACTGTCTTCTCCCTCGCAGCGACCTGTCAG                         ATGCGCACTGCTCGGTGCTGGTTTTGCTGGGCTCTCTGTGGCTTGGCACTT
genomic: GGAACCACTTCATCAGTGCTACTGTCTTCTCCCTCGCAGCGTCCTGTCAGgtctttttca ... tcaaaattagATGCGCACTGCTCGGTGCTGGTTTTGCTGGGCTCTCTGTGGCTTGGCACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgatatgtaaaattgtatgtggccctgatgttctctcggtgctcaaaattagATGCGCACTGCTCGGTGCTGGTTTTGCTGGGCTCTCTGTGGCTTGGCACTTGTTGCAG
                         ccctgat  putative branch site (score: 4)
     atatgtaaaattgtat  TA-rich tract