1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttttttttaattttttgggttattttattctggatatttggtaaaattagaattcatgttcttttgattggcttgattcatttggttgtggtgtttgtagATGTGGTGAGAGACGATCCAACAAACAATGTCCCGGATGAAATTTTTTCAAAACTTGGAATGCAGCTTCACAGGAGGGATCAACACCCAATTGGAATTCT
species | Vitis vinifera |
transcript | Vv11s0103g00120.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCGGTGGTCTCGGTTCTGGAGCTCGGTGGAGTCAAGATTGGCAAAGATG ATGTGGTGAGAGACGATCCAACAAACAATGTCCCGGATGAAATTTTTTCAAEST: gi|351012743|gb|FQ430306.1|FQ430306
genomic: ACCGGTGGTCTCGGTTCTGGAGCTCGGTGGAGTCAAGATTGGCAAAGATGgtaacatccc ... gtgtttgtagATGTGGTGAGAGACGATCCAACAAACAATGTCCCGGATGAAATTTTTTCAA
EST: ACCGGTGGTCTCGGTTCTGGAGCTCGGTGGAGTCAAGATTGGCAAAGATG ATGTGGTGAGAGATGATCCAACAAACAATGTCCCGGATGAAATTTTTTCAAEST: gi|294965549|gb|GW839120.1|GW839120
genomic: ACCGGTGGTCTCGGTTCTGGAGCTCGGTGGAGTCAAGATTGGCAAAGATGgtaacatccc ... gtgtttgtagATGTGGTGAGAGACGATCCAACAAACAATGTCCCGGATGAAATTTTTTCAA
EST: ACCGGTGGTCTCGGTTCTGGAGCTCGGTGGAGTCAAGATTGGCAAAGATG ATGTGGTGAGAGACGATCCAACAAACAATGTCCCGGATGAAATTTTTTCAAEST: gi|352764072|gb|FQ467642.1|FQ467642
genomic: ACCGGTGGTCTCGGTTCTGGAGCTCGGTGGAGTCAAGATTGGCAAAGATGgtaacatccc ... gtgtttgtagATGTGGTGAGAGACGATCCAACAAACAATGTCCCGGATGAAATTTTTTCAA
EST: ACCGGTGGTCTCGGTTCTGGAGCTCGGTGGAGTCAAGATTGGCAAAGATG ATGTGGTGAGAGACGATCCAACAAACAATGTCCCGGATGAAATTTTTTCAAEST: gi|351018426|gb|FQ439238.1|FQ439238
genomic: ACCGGTGGTCTCGGTTCTGGAGCTCGGTGGAGTCAAGATTGGCAAAGATGgtaacatccc ... gtgtttgtagATGTGGTGAGAGACGATCCAACAAACAATGTCCCGGATGAAATTTTTTCAA
EST: ACCGGTGGTCTCGGTTCTGGAGCTCGGTGGAGTCAAGATTGGCAAAGATG ATGTGGTGAGAGATGATCCAACAAACAACGTCCCGGATGAAATTTTTTCAAEST: gi|33406238|gb|CF211865.1|CF211865
genomic: ACCGGTGGTCTCGGTTCTGGAGCTCGGTGGAGTCAAGATTGGCAAAGATGgtaacatccc ... gtgtttgtagATGTGGTGAGAGACGATCCAACAAACAATGTCCCGGATGAAATTTTTTCAA
EST: ACCGGTGGTCTCGGTTCTGGAGCTCGGTGGAGTCAAGATTGGCAAAGATG ATGTGGTGAGAGATGATCCAACAAACAATGTCCCGGATGAAATTTTTTCAAEST: gi|351027010|gb|FQ439870.1|FQ439870
genomic: ACCGGTGGTCTCGGTTCTGGAGCTCGGTGGAGTCAAGATTGGCAAAGATGgtaacatccc ... gtgtttgtagATGTGGTGAGAGACGATCCAACAAACAATGTCCCGGATGAAATTTTTTCAA
EST: ACCGGTGGTCTCGGTTCTGGAGCTCGGTGGAGTCAAGATTGGCAAAGATG ATGTGGTGAGAGATGATCCAACAAACAATGTCCCGGATGAAATTTTTTCAA
genomic: ACCGGTGGTCTCGGTTCTGGAGCTCGGTGGAGTCAAGATTGGCAAAGATGgtaacatccc ... gtgtttgtagATGTGGTGAGAGACGATCCAACAAACAATGTCCCGGATGAAATTTTTTCAA
attagaattcatgttcttttgattggcttgattcatttggttgtggtgtttgtagATGTGGTGAGAGACGATCCAACAAACAATGTCCCGGATGAAATTTTTTCAAAACTTGGAATGCAGCTTCACAGGAGGGATCAACACCCAATTGGAATTCT
ttttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttttaattttttgggttattttattctggatatttggtaaaattagaattcatgttcttttgattggcttgattcatttggttgtggtgtttgtagATGTGGTGAGAGACGATCCAACAAACAATGTCCCGGATGAAATTTTTTCAAAACTTGGAATGCAGCTTCACAGGAGGGATCAACACCCAATTGGAATTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - ttttggg
- - - - - - - - - - - - - attctgg
- - - - - - - - - - - - - - - - - - - -ggtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttgtg