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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctctttctatgcaaaactttacttgttcagcaattctaaaatgttaccttaaaaatgttacttggacagccttcatcttctatatgcttctactaatccattctttacttagataaaatattattttcattgctactcagttgacttcctactgatgctcttgaaaactgaacagATAAACGAGCTCTCTGGAGTTACAGTAGGAGCCACGGTACTAGTAAATGTCCTCCTTGCAGG

Basic information

species Vitis vinifera
transcript Vv11s0078g00490.t01
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattttcattgctactcagttgacttcctactgatgctcttgaaaactgaacagATAAACGAGCTCTCTGGAGTTACAGTAGGAGCCACGGTACTAGTAAATGTCCTCCTTGCAGG
                             tactgat  putative branch site (score: 2)
                                        ttgaaaa  TA-rich tract