Sequence
atgc intronic sequence ATGC exonic sequencegtacaattcacacaatgaatcttttttttttttttttttcctttttctttttttgggtatctatctgtctctagcaaaaggcatgggtgttcttaattttgtcttaatttacagGTCTTAATAGATGTGGGAAGAGTTGCAGATTAAGATGGACTAATTATTTGAGGCCTGATATCAAGAGAGGGAAATTTTCTCGAGAAGAAGAGGAGACAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0078g00480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G10280.1 (Arabidopsis thaliana), 3'ss of exon 1
gtacaattcacacaatgaatcttttttttttttttttttcctttttctttttttgggtatctatctgtctctagcaaaaggcatgggtgttcttaattttgtcttaatttacagGTCTTAATAGATGTGGGAAGAGTTGCAGATTAAGATGGACTAATTATTTGAGGCCTGATATCAAGAGAGGGAAATTTTCTCGAGAAGAAGAGGAGACAAT
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----------------------------gtaatgcttttgtgttctttctttcttgaaagct---tgtcttaagtctaagc--------ttctcatgtgattctctctgtgcagGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTAAGATGGACGAACTACTTGAGACCAGACATCAAGAGAGGGAGATTCTCTCCGGACGAGGAACAGACTAT
upper sequence: Vv11s0078g00480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G65230.1 (Arabidopsis thaliana), 3'ss of exon 1
gtacaattcacacaatgaatcttttttttttttttttttcctttttctttttttgggtatctatctgtctctagcaaaaggc--atgggtgttcttaattttgtcttaatttacagGTCTTAATAGATGTGGGAAGAGTTGCAGATTAAGATGGACTAATTATTTGAGGCCTGATATCAAGAGAGGGAAATTTTCTCGAGAAGAAGAGGAGACAAT
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-----------gtact--atcttgaagacgttgatgaaacctagttttgtttgtga-----tatgagtctaaagtcttagtcttatgaatatatctctgtttctctatatatgcagGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTACGATGGACAAACTATTTGAGACCAGACATTAAGCGAGGAAAATTCTCTGCGGAGGAAGAAGAGACCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714725|gb|FC062680.1|FC062680EST: TATCCAGAAACAAGGCCATGGAAGCTGGAGAGCCCTCCCCAAACTTGCAG GTCTTAATAGATGTGGGAAGAGTTGCAGATTAAGATGGACTAATTATTTGA
genomic: TATCCAGAAACAAGGCCATGGAAGCTGGAGAGCCCTCCCCAAACTTGCAGgtacaattca ... taatttacagGTCTTAATAGATGTGGGAAGAGTTGCAGATTAAGATGGACTAATTATTTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctatctgtctctagcaaaaggcatgggtgttcttaattttgtcttaatttacagGTCTTAATAGATGTGGGAAGAGTTGCAGATTAAGATGGACTAATTATTTGAGGCCTGATATCAAGAGAGGGAAATTTTCTCGAGAAGAAGAGGAGACAAT
tcttaat putative branch site (score: 3)
ttttgtctt CT-rich tract
ttcttaattttgtctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacaattcacacaatgaatcttttttttttttttttttcctttttctttttttgggtatctatctgtctctagcaaaaggcatgggtgttcttaattttgtcttaatttacagGTCTTAATAGATGTGGGAAGAGTTGCAGATTAAGATGGACTAATTATTTGAGGCCTGATATCAAGAGAGGGAAATTTTCTCGAGAAGAAGAGGAGACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA