Sequence
atgc intronic sequence ATGC exonic sequence...tattattgttttttactgtctcttgttttgagaatgtttaatcttttctctttgcacatatatcaacttgatggtgggaatcattgtgaattgcttgcagATATCGGAGTGGATGGTTTCTCATGATGAATTTGAGTTATCAGATTCTGACAATGCAGTTCGAATTGACTTGATGACTAGAGTTTTTGGTATTGATGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0078g00180.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G06180.2 (Glycine max), 3'ss of exon 2
----tatt-attgttttttactgtctcttgttttgagaatgtttaatcttttctctttgcacatatatcaacttgatggtgggaatcattgtgaattgcttgcagATATCGGAGTGGATGGTTTCTCATGATGAATTTGAGTTATCAGATTCTGACAATGCAGTTCGAATTGACTTGATGACTAGAGTTTTTGGTATTGATGCTG
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gttgcatccaacttggaccactttattatgatttatgaatact-gctctctttttctgttggatctatagctttgcaatttgtgactattgataattgc----agATATCAGAGTGGATGGTTAGCAATGAGGAATATGAGTTATCAGACTCTGATTATGCAGTCCGCATAGATTTGATGACCCAAGTTTTTGGCATTGATGCTG
upper sequence: Vv11s0078g00180.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G18840.1 (Glycine max), 3'ss of exon 2
---tattattgttttttactgtctcttgt--tttgagaatgtt-taatcttttctctttgcacatatatcaacttgatggtgggaatcattgtgaattgcttgcagATATCGGAGTGGATGGTTTCTCATGATGAATTTGAGTTATCAGATTCTGACAATGCAGTTCGAATTGACTTGATGACTAGAGTTTTTGGTATTGATGCTG
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ttgcatc-taacttggaacaatttattatgatttatgaatactgctctctttttcagttggatctatagct-tttgcaatttgtgattattgataattgc----agATATCTGAGTGGATGGTTAGCCATGAGGAATACGAGTTATCAGACTCTGATTATGCAGCCCGCATAGATTTGACTACCAAAGTTTTTGGCATTGATGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctctttgcacatatatcaacttgatggtgggaatcattgtgaattgcttgcagATATCGGAGTGGATGGTTTCTCATGATGAATTTGAGTTATCAGATTCTGACAATGCAGTTCGAATTGACTTGATGACTAGAGTTTTTGGTATTGATGCTG
acttgat putative branch site (score: 5)
atatatcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tattattgttttttactgtctcttgttttgagaatgtttaatcttttctctttgcacatatatcaacttgatggtgggaatcattgtgaattgcttgcagATATCGGAGTGGATGGTTTCTCATGATGAATTTGAGTTATCAGATTCTGACAATGCAGTTCGAATTGACTTGATGACTAGAGTTTTTGGTATTGATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - -tactgtc
- - - - - - - - - - - - - - -gagaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtggg