1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcgagtttcttgcttttgttttattgctaagacaatagctgagagttaaatctgatgtacttctgtttgttttgtgttgatggggtttggaaattcatagGCATTTATGGAGATTCAAGGTCACATGATCGAAACTACTGGAAAATTGAAGCAG
species | Vitis vinifera |
transcript | Vv11s0065g00480.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTAAGGTTTCTCAGGAAAATGGCCGATGAAGCTAACAGAACT GCATTTATGGAGATTCAAGGTCACATGATCGAAACTACTGGAAAATTGAAGEST: gi|71873337|gb|DT022392.1|DT022392
genomic: ATTAAGGTTTCGCAGGAAAATGGCCGATGAAGCTAACAGAACTgtaagaaaaa ... aaattcatagGCATTTATGGAGATTCAAGGTCACATGATCGAAACTACTGGAAAATTGAAG
EST: GGTTTCTCAGG-AAATGGCCGATGAAGCTAACAGAACT GCATTTATGGAGATTCAAGGTCACATGATCGAAACTACTGGAAAATTGAAGEST: gi|110380311|gb|EC945566.1|EC945566
genomic: GGTTTCGCAGGAAAATGGCCGATGAAGCTAACAGAACTgtaagaaaaa ... aaattcatagGCATTTATGGAGATTCAAGGTCACATGATCGAAACTACTGGAAAATTGAAG
EST: TAAGGTTTCTCAGGAAAATGGCCGATGAAGCTAACAGAACT GCATTTATGGAGATTCAAGGTCACATGATCGAAACTACTGGAAAATTGAAGEST: gi|110421110|gb|EC987398.1|EC987398
genomic: TAAGGTTTCGCAGGAAAATGGCCGATGAAGCTAACAGAACTgtaagaaaaa ... aaattcatagGCATTTATGGAGATTCAAGGTCACATGATCGAAACTACTGGAAAATTGAAG
EST: TCGCAGGAAAATGGCCGATGAAGCTAACAGAACT GCATTTATGGAGATTCAAGGTCACATGATCGAAACTACTGGAAAATTGAAGEST: gi|110390962|gb|EC955912.1|EC955912
genomic: TCGCAGGAAAATGGCCGATGAAGCTAACAGAACTgtaagaaaaa ... aaattcatagGCATTTATGGAGATTCAAGGTCACATGATCGAAACTACTGGAAAATTGAAG
EST: ATTTGCTATTAAGGTTTCTCAGGAAAATGGCCGATGAAGCTAACAGAACT GCATTTATGGAGATTCAAGGTCACATGATCGAAACTACTGGAAAATTGAAGEST: gi|110392562|gb|EC958071.1|EC958071
genomic: ATTTGCTATTAAGGTTTCGCAGGAAAATGGCCGATGAAGCTAACAGAACTgtaagaaaaa ... aaattcatagGCATTTATGGAGATTCAAGGTCACATGATCGAAACTACTGGAAAATTGAAG
EST: CAGGAAAATGGCCGATGAAGCTAACAGAACT GCATTTATGGAGATTCAAGGTCACATGATCGAAACTACTGGAAAATTGAAG
genomic: CAGGAAAATGGCCGATGAAGCTAACAGAACTgtaagaaaaa ... aaattcatagGCATTTATGGAGATTCAAGGTCACATGATCGAAACTACTGGAAAATTGAAG
ttaaatctgatgtacttctgtttgttttgtgttgatggggtttggaaattcatagGCATTTATGGAGATTCAAGGTCACATGATCGAAACTACTGGAAAATTGAAGCAG
tgttgat putative branch site (score: 4)
aaattcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgagtttcttgcttttgttttattgctaagacaatagctgagagttaaatctgatgtacttctgtttgttttgtgttgatggggtttggaaattcatagGCATTTATGGAGATTCAAGGTCACATGATCGAAACTACTGGAAAATTGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - ttcttgc
- - - - - - - - - - - - - - aagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtttg