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...ttctctccaaataacaagcatgagtcaccaacttatttgtattttatggccgtctcttgttttctatcagttatgacatccgggcatctaccttttgtagTTTTGAGATTTCGAAAGGCAATTGTGCAGCAAAGTCATGGGTTCGTCATCAGCTGACACTTTTCCAGTCATGCAG
species | Vitis vinifera |
transcript | Vv11s0065g00450.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAACGCTGCGTTTCGGTCGATTTCTCAGTTCAAG TTTTGAGATTTCAAAAGGCAATTGTGCAGCAAAGTCATGGGTTCGTCATCAEST: gi|294964296|gb|GW838099.1|GW838099
genomic: CAAACGCTGCGTTTCGGTCGATTTCTCAGTTCAAGgtactgctct ... ccttttgtagTTTTGAGATTTCGAAAGGCAATTGTGCAGCAAAGTCATGGGTTCGTCATCA
EST: TGATCATTGCTTCTCCAAACGCTGCGTTTCGGTCGATTTCTCAGTTCAAG TTTTGAGATTTCGAAAGGCAATTGTGCAGCAAAGTCATGGGTTCGTCATCAEST: gi|351028718|gb|FQ433148.1|FQ433148
genomic: TGATCATTGCTTCTCCAAACGCTGCGTTTCGGTCGATTTCTCAGTTCAAGgtactgctct ... ccttttgtagTTTTGAGATTTCGAAAGGCAATTGTGCAGCAAAGTCATGGGTTCGTCATCA
EST: AAACGCTGCGTTTCGGTCGATTTCTCAGTTCAAG TTTTGAGATTTCAAAAGGCAATTGTGCAGCAAAGTCATGGGATCGTCATCAEST: gi|22011495|gb|BQ796529.1|BQ796529
genomic: AAACGCTGCGTTTCGGTCGATTTCTCAGTTCAAGgtactgctct ... ccttttgtagTTTTGAGATTTCGAAAGGCAATTGTGCAGCAAAGTCATGGGTTCGTCATCA
EST: CTTCTCCAAACGCTGCGTTTCGGTCGATTTCTCAGTTCAAG TTTTGAGATTTCGAAAGGCAATTGTGCAGCAAAGTCATGGGTTCGTCATCA
genomic: CTTCTCCAAACGCTGCGTTTCGGTCGATTTCTCAGTTCAAGgtactgctct ... ccttttgtagTTTTGAGATTTCGAAAGGCAATTGTGCAGCAAAGTCATGGGTTCGTCATCA
atggccgtctcttgttttctatcagttatgacatccgggcatctaccttttgtagTTTTGAGATTTCGAAAGGCAATTGTGCAGCAAAGTCATGGGTTCGTCATCAGCTGACACTTTTCCAGTCATGCAG
tctacctttt CT-rich tract
ttttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctctccaaataacaagcatgagtcaccaacttatttgtattttatggccgtctcttgttttctatcagttatgacatccgggcatctaccttttgtagTTTTGAGATTTCGAAAGGCAATTGTGCAGCAAAGTCATGGGTTCGTCATCAGCTGACACTTTTCCAGTCATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- ctctcca
- - - - - - -acaagca
- - - - - - - - - - - - tcaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatcta