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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcccgcctttcatagtacttgttgcacatcatcctccatttgatgacaatttgttctcctgattagtatatagttcttatttatgtatgtgtgtatttgcagTTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGCAATCTCAGTGGTGATCCATACATTCTTCACACTAATGTGTTCAGCCAAG

Basic information

species Vitis vinifera
transcript Vv11s0052g01180.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77584372|gb|DV221256.1|DV221256
EST:     AGCTCAAACTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTAT                         TTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGC
genomic: AGCTCAAACTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTATgtaagcccgc ... gtatttgcagTTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGC
EST: gi|71859609|gb|DT008664.1|DT008664
EST:     AGCTCAAACTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTAT                         TTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGC
genomic: AGCTCAAACTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTATgtaagcccgc ... gtatttgcagTTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGC
EST: gi|71869843|gb|DT018898.1|DT018898
EST:     AGCTCAAATTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTAT                         TTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGC
genomic: AGCTCAAACTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTATgtaagcccgc ... gtatttgcagTTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGC
EST: gi|161716729|gb|FC065576.1|FC065576
EST:     AGCTCAAATTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTAT                         TTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGC
genomic: AGCTCAAACTTGTTCCTGGAAACTCTGCTGGCACTGTCACTGCCTATTATgtaagcccgc ... gtatttgcagTTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgttctcctgattagtatatagttcttatttatgtatgtgtgtatttgcagTTATCTTCACAAGGGCCAACCCATGATGAAATCGACTTCGAATTCCTGGGCAATCTCAGTGGTGATCCATACATTCTTCACACTAATGTGTTCAGCCAAG
         tcctgat  putative branch site (score: 3)
              attagtatatagttct  TA-rich tract