Sequence
atgc intronic sequence ATGC exonic sequence...agtcttcacatgtcacttaatatttatatagctatgcatttatattcaaatccttttatatgtgttattgtactaatcaaagttgattcaaattggacagAATATACCAGAATCCTTAACAGCAAGACTACTAAATGTGGTGATATTGGATGTGCACTCAAATCAGCTTAAATCCCTCCCAAACTCAATTGGGTGTCTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g00390.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G06490.1 (Glycine max), 3'ss of exon 1
agtcttcacatgtcacttaatatttatatagctatgcatttatattcaaatccttttatatgtgttattgtactaatcaaagttgattc---aaattg-gacagAATATACCAGAATCCTTAACAGCAAGACTACTAAATGTGGTGATATTGGATGTGCACTCAAATCAGCTTAAATCCCTCCCAAACTCAATTGGGTGTCTTT
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-gccataacttaat-ttaaatgaatccgaagtgacctgtcttaagttg--ttgtttggttcgccttgaagaaatgaatgtaatttatttttaatattgtgacagAATATACCGGAGTCCTTAACGGCGAGACTGCTGAACATGGTGGTGTTGGACGTGCACTCCAATCAGCTTAGGTCCCTCCCAAATTCCATTGGCTGCCTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaaatccttttatatgtgttattgtactaatcaaagttgattcaaattggacagAATATACCAGAATCCTTAACAGCAAGACTACTAAATGTGGTGATATTGGATGTGCACTCAAATCAGCTTAAATCCCTCCCAAACTCAATTGGGTGTCTTT
ttttatatgtgttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtcttcacatgtcacttaatatttatatagctatgcatttatattcaaatccttttatatgtgttattgtactaatcaaagttgattcaaattggacagAATATACCAGAATCCTTAACAGCAAGACTACTAAATGTGGTGATATTGGATGTGCACTCAAATCAGCTTAAATCCCTCCCAAACTCAATTGGGTGTCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - -acatgtc
- - - - - - - - - - - - - - - -ctatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaaa