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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaccagtcttagaatcaacaaaggattatttcctgttcactcgttcttttgtgtaatatgacccatatcattattaattccagATGTTAGTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGGATACGAAGGAAGAGTCACAATGACATTGTTCCTAAGCGTGATATAACTTTTGCGGACAA

Basic information

species Vitis vinifera
transcript Vv11s0037g00650.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0037g00650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G61000.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagaaccagtcttagaatcaacaaaggat-tatttcctgttcactcgttcttttgt-gtaatatgacccatatcattat-taattccagATGTTAGTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGGATACGAAGGAAGAGTCACAATGACATTGTTCCTAAGCGTGATATAACTTTTGCGGACAA
|||||| ||    |||   |||   ||   | | ||||| | | | |  | | || || || |||  | |   ||  ||||   ||| ||||| ||| |||||||||||||||||| |||||||| ||||| ||  ||||||  | | ||||||| ||  |||||||| | ||||||||||| || ||  |
gtaagagcc----ttattgtcattgaacattctttttccaggtaaattatacattggttgtgataataacttaattgttatgctatttcagATCTTATTGGAGTTGTTCAAAGTGTATCTCCTACCATGAGTATTAGAAGGAGAACTGACAATGAGATGATTCCTAAGAGGGATATAACTTTGGCTGATGA

upper sequence: Vv11s0037g00650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G08020.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagaaccagtcttagaatcaacaaaggattatttcc---tgttcactcgttcttttgtgtaat--atgacccatatcattattaattccagATGTTAGTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGGATACGAAGGAAGAGTCACAATGACATTGTTCCTAAGCGTGATATAACTTTTGCGGACAA
|||||| |   | |    ||  |       || |||       ||   |  |  |      || |   ||||    ||  || | | ||||||||||||  || |||||||||||||| |||||||| ||||| ||  |||||||||   ||||||| ||  | || ||| | ||||||||||| || ||  |
gtaagagctgttatctatattgaactctttttgtttgtaaacattggtttatgatgaaacttagttagtgactttaatgtttctcatttccagATGTTATCGGTGTTGTTCAAAGTGTTTCTCCTACCATGAGCATTAGAAGGAAGAACGACAATGAGATGATCCCAAAGAGAGATATAACTTTGGCTGATGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcctgttcactcgttcttttgtgtaatatgacccatatcattattaattccagATGTTAGTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGGATACGAAGGAAGAGTCACAATGACATTGTTCCTAAGCGTGATATAACTTTTGCGGACAA
                                           tattaat  putative branch site (score: 2)
                                    atatcattattaatt  TA-rich tract