1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...caattgctgtatcagtttcattttggaactggaaatagttctggccttcatttccttcttctgttgaatcagttttgtgttacattatgtttctttgcagTGTATGATGTTTTGGATCAGTTAGTGTGTTGGATATTGGCAATTCCATGGTTGATGTGGAGATGAGCCACCAAAATGAGGTTCCTAACTCTGATGCAGAA
species | Vitis vinifera |
transcript | Vv11s0016g05460.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTTGCTATTTCAACCCCTACATCAATGGTGTCTTAATTGCCCCATTCAG TGTATGATGTTTTGGATCAGTTAGTGTGTTGGATATTGGCAATTCCATGGT
genomic: CTTTGCTATTTCAACCCCTACATCAATGGTGTCTTAATTGCCCCATTCAGgttataccca ... ttctttgcagTGTATGATGTTTTGGATCAGTTAGTGTGTTGGATATTGGCAATTCCATGGT
cttcatttccttcttctgttgaatcagttttgtgttacattatgtttctttgcagTGTATGATGTTTTGGATCAGTTAGTGTGTTGGATATTGGCAATTCCATGGTTGATGTGGAGATGAGCCACCAAAATGAGGTTCCTAACTCTGATGCAGAA
tgtttcttt CT-rich tract
ttacattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caattgctgtatcagtttcattttggaactggaaatagttctggccttcatttccttcttctgttgaatcagttttgtgttacattatgtttctttgcagTGTATGATGTTTTGGATCAGTTAGTGTGTTGGATATTGGCAATTCCATGGTTGATGTGGAGATGAGCCACCAAAATGAGGTTCCTAACTCTGATGCAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - tgctgta
- - - - - - - - - - - - - - - ggaaata
- - - - - - - - - - - - - - - - - - -gttctgg