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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctcatctgtctccacccttccactcacgccttcaacgattctcacgaactctctgacttcattagGTATATGCGGGTCATGCGATCTTCCGCTAGGGTTTTATTTTCGATCAAGACGGAGTTCGGAGGTTGCTTGTGTTTGTGTTCTGTTTGGTTGCTGAGAAAT

Basic information

species Vitis vinifera
transcript Vv11s0016g04410.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294964508|gb|GW838311.1|GW838311
EST:     CGATCTCTCTCCGATTCGATTCGATTTCCGATCCTTCTCGCTCCGTACAG                         GTATATGCGGGTCATGCGATCTTCCGCTAGGGTTTTATTTTCGATCAAGAC
genomic: CGATCTCTCTCCGATTCGATTCGATTTCCGATCCTTCTCGCTCCGTACAGgttctcatct ... acttcattagGTATATGCGGGTCATGCGATCTTCCGCTAGGGTTTTATTTTCGATCAAGAC
EST: gi|110723373|gb|EE100611.1|EE100611
EST:     CGATCTCTCTCCGATTCGATTCGATTTCCGATCCTTCTCGCTCCGTACAG                         GTATATGCGGGTCATGCGATCTTCCGCTAGGGTTTTATTTTCGATCAAGAC
genomic: CGATCTCTCTCCGATTCGATTCGATTTCCGATCCTTCTCGCTCCGTACAGgttctcatct ... acttcattagGTATATGCGGGTCATGCGATCTTCCGCTAGGGTTTTATTTTCGATCAAGAC
EST: gi|110691180|gb|EE068986.1|EE068986
EST:     CGATCTCTCTCCGATTCGATTCGATTTCCGATCCTTCTCGCTCCGTACAG                         GTATATGCGGGTCATGCGATCTTCCGCTAGGGTTTTATTTTCGATCAAGAC
genomic: CGATCTCTCTCCGATTCGATTCGATTTCCGATCCTTCTCGCTCCGTACAGgttctcatct ... acttcattagGTATATGCGGGTCATGCGATCTTCCGCTAGGGTTTTATTTTCGATCAAGAC
EST: gi|71857777|gb|DT006832.1|DT006832
EST:     CGATCTCTCTCCGATTCGATTCGATTTCCAATCCTTCTCGCTCCGTACAG                         GTATATGCGGGTCATGCGATCTTCCGCTAGGGTTTTATTTTCGATCAAGAC
genomic: CGATCTCTCTCCGATTCGATTCGATTTCCGATCCTTCTCGCTCCGTACAGgttctcatct ... acttcattagGTATATGCGGGTCATGCGATCTTCCGCTAGGGTTTTATTTTCGATCAAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccacccttccactcacgccttcaacgattctcacgaactctctgacttcattagGTATATGCGGGTCATGCGATCTTCCGCTAGGGTTTTATTTTCGATCAAGACGGAGTTCGGAGGTTGCTTGTGTTTGTGTTCTGTTTGGTTGCTGAGAAAT
                                              cttcatt  CT-rich tract
                                               ttcatta  TA-rich tract