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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcacaccttaaccgtttttttttataaaaaaaaaagataaatattgaggtttagattgattcattctcgtgacgcagATTCGAGTTTTGTTCCACCGTTGGTTTATGCTGTTTTTGGGAGCTCCAGGAGTATGGCAGTGGGAACAGTGGCGGCGGTGTCGTTGCTTATAGCCTCTAC

Basic information

species Vitis vinifera
transcript Vv11s0016g04160.t01
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataaaaaaaaaagataaatattgaggtttagattgattcattctcgtgacgcagATTCGAGTTTTGTTCCACCGTTGGTTTATGCTGTTTTTGGGAGCTCCAGGAGTATGGCAGTGGGAACAGTGGCGGCGGTGTCGTTGCTTATAGCCTCTAC
                               gattgat  putative branch site (score: 4)
                                     ttcattctc  CT-rich tract
     aaaaaaaagataaata  TA-rich tract