Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgacgaacactttgactggttggcttggatgtatttctggtatttctagaaatcgattttattgttttataatttttctgtgttctgtttcaacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGTGTGGGTGCTTATCGAACAGAG

Basic information

species Vitis vinifera
transcript Vv11s0016g03720.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71856755|gb|DT005810.1|DT005810
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCAGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCGATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|161707491|gb|FC057730.1|FC057730
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCGATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|110707578|gb|EE084139.1|EE084139
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|161709257|gb|FC060537.1|FC060537
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCAGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCGATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|161719323|gb|FC068275.1|FC068275
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCAGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCGATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|351043366|gb|FQ451418.1|FQ451418
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|351041433|gb|FQ447560.1|FQ447560
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|351032771|gb|FQ462485.1|FQ462485
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|30126137|gb|CB911476.1|CB911476
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCGATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|71857156|gb|DT006211.1|DT006211
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCAGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCGATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|351036480|gb|FQ457193.1|FQ457193
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|71859825|gb|DT008880.1|DT008880
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCAGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCGATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|71854888|gb|DT003943.1|DT003943
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCAGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCGATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|349819864|gb|FQ404532.1|FQ404532
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|71879610|gb|DT028665.1|DT028665
EST:     CTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCGATCAAGTTGAATTTGGGT
genomic: CTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|161709194|gb|FC060110.1|FC060110
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCGATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|352778302|gb|FQ465612.1|FQ465612
EST:     GCTCTGTCTTCTCCAACATCCTTCGTGCTCCTGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|161708734|gb|FC057910.1|FC057910
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCAGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCGATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|352776536|gb|FQ474838.1|FQ474838
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|349816215|gb|FQ403711.1|FQ403711
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
EST: gi|71861868|gb|DT010923.1|DT010923
EST:     GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGG                         GTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT
genomic: GCTCTGTCTTCTCCAACATCGTTCGTGCTCCTGAGGATCCCATTCTTGGGgtactttttc ... caacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagaaatcgattttattgttttataatttttctgtgttctgtttcaacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGTGTGGGTGCTTATCGAACAGAG
                                     ttctgtttc  CT-rich tract
     aatcgattttattgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgacgaacactttgactggttggcttggatgtatttctggtatttctagaaatcgattttattgttttataatttttctgtgttctgtttcaacaaacagGTCACTGTTGCTTATAACAAGGATACCAGCCCAATCAAGTTGAATTTGGGTGTGGGTGCTTATCGAACAGAG

- - - - - - - - tggttgg
- - - - - - - - - - - - -tggatgt
- - - - - - - - - - - - - - - - -tttctgg
- - - - - - - - - - - - - - - - - - - - - - - -agaaatc