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...aatgggataacatggaaattgaaagcctaatgttatggtgaaaggcattgacgtgcccttgtaattgttggcgtttaatgtggtgcaacattgattccagAGATCTCCGAATTAGGAAATTGGAGGAAGGCTAGTCACAATTGGGCATGTGGGGACGTCAAGGTGAAGCTTCCGTGACATACAAGCGTGTGTCATCAAGA
species | Vitis vinifera |
transcript | Vv11s0016g03660.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGCCTCAGATCCGCTCTTCCTCGCTGTTTGATGAACCCTCAATAAAGAG AGATCTCCGAATTAGGAAATTGGAGGAAGGCTAGTCACAATTGGGCATGTGEST: gi|71860519|gb|DT009574.1|DT009574
genomic: GTGCCTTAGATCCGCTCTTCCTCGCTGTTTGATGAACCCTCAATAAAGAGgtaacgagct ... ttgattccagAGATCTCCGAATTAGGAAATTGGAGGAAGGCTAGTCACAATTGGGCATGTG
EST: GTGCCTCAGATCCGCTCTTCCTCGCTGTTTGATGAACCCTCAATAAAGAG AGATCTCCGAATTAGGAAATTGGAGGAAGGCTAGTCACAATTGGGCATGTGEST: gi|71861991|gb|DT011046.1|DT011046
genomic: GTGCCTTAGATCCGCTCTTCCTCGCTGTTTGATGAACCCTCAATAAAGAGgtaacgagct ... ttgattccagAGATCTCCGAATTAGGAAATTGGAGGAAGGCTAGTCACAATTGGGCATGTG
EST: GTGCCTCAGATCCGTTCTTCGTCGCTGTTTGACGAACCCTCAATAAAGAG AGATCTCCGAATTAGGAAATTGGAGGAAGGCTAGTCACAATTGGGCATGTGEST: gi|161714953|gb|FC064236.1|FC064236
genomic: GTGCCTTAGATCCGCTCTTCCTCGCTGTTTGATGAACCCTCAATAAAGAGgtaacgagct ... ttgattccagAGATCTCCGAATTAGGAAATTGGAGGAAGGCTAGTCACAATTGGGCATGTG
EST: GTGCCTCAGATCCGTTCTTCGTCGCTGTTTGACGAACCCTCAATAAAGAG AGATCTCCGAATTAGGAAATTGGAGGAAGGCTAGTCACAATTGGGCATGTG
genomic: GTGCCTTAGATCCGCTCTTCCTCGCTGTTTGATGAACCCTCAATAAAGAGgtaacgagct ... ttgattccagAGATCTCCGAATTAGGAAATTGGAGGAAGGCTAGTCACAATTGGGCATGTG
cattgacgtgcccttgtaattgttggcgtttaatgtggtgcaacattgattccagAGATCTCCGAATTAGGAAATTGGAGGAAGGCTAGTCACAATTGGGCATGTGGGGACGTCAAGGTGAAGCTTCCGTGACATACAAGCGTGTGTCATCAAGA
ttgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgggataacatggaaattgaaagcctaatgttatggtgaaaggcattgacgtgcccttgtaattgttggcgtttaatgtggtgcaacattgattccagAGATCTCCGAATTAGGAAATTGGAGGAAGGCTAGTCACAATTGGGCATGTGGGGACGTCAAGGTGAAGCTTCCGTGACATACAAGCGTGTGTCATCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - catggaa
- - - - - - - - - - - - -cctaatg
- - - - - - - - - - - - - - - - - - - - aaaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggtg