Sequence
atgc intronic sequence ATGC exonic sequence...aggagccatggcatctcaagttcttaagaactatttcttgtttgaaacttgttgcacttcagcattgcaatgctaaccatcagtggacatttcatgtcagAGTCATGCGGGTCTCTTCAACCTCTGTATAGTAGTGCTTGTAGCTGTAAACAGCCGGCTTATCATTGAGAATCTTATGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G16560.1 (Glycine max), 3'ss of exon 1
aggagccatggcatctcaagttcttaagaactatttcttgtttgaaacttgttgcact---tcagcattgcaatgctaac-catcagtggacatttcat--gt--cagAGTCATGCGGGTCTCTTCAACCTCTGTATAGTAGTGCTTGTAGCTGTAAACAGCCGGCTTATCATTGAGAATCTTATGAAG
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---gatcaggtttttgtacctgct-----attgtgtttggtttataattaggtgtgatgagtctgatatgtaattatatttctttactaattattcaatcagttgcagAGTCACGCGGGCCTCTTCAACCTCTGTATAGTAGTCCTTGTTGCTGTGAATAGCCGACTCATCATTGAGAATTTAATGAAG
upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G06120.1 (Glycine max), 3'ss of exon 1
----aggagccatggca--tctcaagttcttaagaactatttcttgtttgaaacttgttgcacttcagcattgcaatgctaaccatcagtggacatttcatgtcagAGTCATGCGGGTCTCTTCAACCTCTGTATAGTAGTGCTTGTAGCTGTAAACAGCCGGCTTATCATTGAGAATCTTATGAAG
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atcaggtttttgtagcaattatcgtggtttggtttataaataggtgtgatgagtctgatatgtaattatatttctttactaattattg------aatcggttgcagAGTCACGCGGGCCTCTTCAACCTTTGTATAGTAGTCCTTGTTGCTGTGAATAGCCGACTCATCATTGAGAATTTAATGAAG
upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G07520.1 (Glycine max), 3'ss of exon 1
aggagccatggcatctcaagttcttaagaactatttcttgtttgaaacttgttgcacttcagcattgcaatgctaaccatcagtg---gacatttcatgtcagAGTCATGCGGGTCTCTTCAACCTCTGTATAGTAGTGCTTGTAGCTGTAAACAGCCGGCTTATCATTGAGAATCTTATGAAG
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-ttagttgttttgttt--gtttgtttatcttttggcctcatctatagttctttctattttttatttttactaataattgtcattgttaatcaatgaattacagAGTCATGCAGGACTGTTCAATCTCTGCATAGTAGTGCTTGTTGCCGTGAACAGCAGACTTATCATTGAGAATTTAATGAAG
upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G19450.1 (Arabidopsis thaliana), 3'ss of exon 1
aggagccatggcatctcaagttcttaagaactatttcttgtttgaaacttg-ttgcacttcagcattgcaatgctaaccatcagtggacatttcatgtcagAGTCATGCGGGTCTCTTCAACCTCTGTATAGTAGTGCTTGTAGCTGTAAACAGCCGGCTTATCATTGAGAATCTTATGAAG
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-------------gtttaaaatctcagaaatc--ttcgaatttggtgtttgcttgttgttttatatggaattgagtttggtgattg--ttttgcattgcagAGCCATGCCGGATTATTCAACCTCTGTGTAGTAGTTCTTATTGCTGTAAACAGTAGACTCATCATCGAAAATCTTATGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacttgttgcacttcagcattgcaatgctaaccatcagtggacatttcatgtcagAGTCATGCGGGTCTCTTCAACCTCTGTATAGTAGTGCTTGTAGCTGTAAACAGCCGGCTTATCATTGAGAATCTTATGAAG
tgctaac putative branch site (score: 1)
atttcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aggagccatggcatctcaagttcttaagaactatttcttgtttgaaacttgttgcacttcagcattgcaatgctaaccatcagtggacatttcatgtcagAGTCATGCGGGTCTCTTCAACCTCTGTATAGTAGTGCTTGTAGCTGTAAACAGCCGGCTTATCATTGAGAATCTTATGAAG
- - -ccatggc
- - - - - - - - - - - - -aagaacta
- - - - - - - - - - - - - - - - - - - - - - - - -tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatcag