1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaattttgaccaagtattatggtattgtttatgcgtattacctttttcctttttggttcgcattttgatgggtttgttgtttttggtcatggatttgcagATGTTGAAGAGTTCTACCAGCAATGCGATCCCG
species | Vitis vinifera |
transcript | Vv11s0016g01500.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGCGGGCATGATCAAAGCCCTCACCACTG ATGTTGAAGAGTTCTACCAGCAATGCGATCCCGEST: gi|110702780|gb|EE079049.1|EE079049
genomic: GAGCGGGCATGATCAAAGCCCTCACCACTGgttagatttc ... ggatttgcagATGTTGAAGAGTTCTACCAGCAATGCGATCCCG
EST: GGATTTTAAGGGTCGCAGAGCGGGCATGATCAAAGCCCTCACCACTG ATGTTGAAGAGTTCTACCAGCAATGCGATCCCG
genomic: GGATTTTAAGGGTCGCAGAGCGGGCATGATCAAAGCCCTCACCACTGgttagatttc ... ggatttgcagATGTTGAAGAGTTCTACCAGCAATGCGATCCCG
ttcctttttggttcgcattttgatgggtttgttgtttttggtcatggatttgcagATGTTGAAGAGTTCTACCAGCAATGCGATCCCG
ttttgat putative branch site (score: 4)
attttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattttgaccaagtattatggtattgtttatgcgtattacctttttcctttttggttcgcattttgatgggtttgttgtttttggtcatggatttgcagATGTTGAAGAGTTCTACCAGCAATGCGATCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - -ccaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtttg