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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcaagttcgttctttttattttccagtattgaattttccttaatgggttggtgatgaaatggtgttttttccttcctttgattgcagACAGAAGTGATTTTTCTCGGGCAACTGAGGCACCCGCATCTTGTCAAGCTGATCGGGTATTGTTGCGAGGACGAGCACAGGCTCCTGGTATACGAATACA

Basic information

species Vitis vinifera
transcript Vv11s0016g01060.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g01060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os03g08170.1 (Oryza sativa), 3'ss of exon 1
-----gtgagttcaagttcgttctttttattttccagtattgaattttc---cttaatgggttggtgatgaaatg-gtgttttttccttcctttgattgcagACAGAAGTGATTTTTCTCGGGCAACTGAGGCACCCGCATCTTGTCAAGCTGATCGGGTATTGTTGCGAGGACGAGCACAGGCTCCTGGTATACGAATACA
      |   | | ||||        | |  |   |  |   ||| |     ||| |  |    ||    |||||  |   |   ||     ||   ||||||| ||||| || ||||| |||||||||||||| || || || ||||| |||||||| || || | |||||| || ||||| || || || ||||| | ||
tttatttttctcccagttaaaagcaatcaaatgagaaaaaaaaatgtctggacttgactgacaagtctgcaaatgcatacatggcccgatgatta--tgcagACTGAAGTCATCTTTCTGGGGCAACTGAGGCATCCTCACCTCGTCAAACTGATCGGCTACTGCTACGAGGATGAACACAGACTTCTCGTTTACGAGTTCA

upper sequence: Vv11s0016g01060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G175164_T01 (Zea mays), 3'ss of exon 1
-----gtgagttcaagttcgttctttttattttccagtattgaattttccttaatgggttggtgatgaaatggtgttttttccttcctttgat---tgcagACAGAAGTGATTTTTCTCGGGCAACTGAGGCACCCGCATCTTGTCAAGCTGATCGGGTATTGTTGCGAGGACGAGCACAGGCTCCTGGTATACGAATACA
     |  | ||  | ||      || | | || |  |||| ||||     | |  | |   ||||  |    || |    || | | |  ||    |||||| || ||  | || || || |||||||||||||| || || || ||||||||||| || || | |||||||||||||||||| || || ||||| | ||
cgacagatatttacaattttacagttgtgtgttacgttatt-aattaaaactgacagatgcatgatctacgtatgctaaaaccatgcatatatatacgcagACGGAGGTCTTCTTCCTGGGACAACTGAGGCACCCTCACCTCGTGAAGCTGATCGGCTACTGCTACGAGGACGAGCACAGGCTGCTCGTCTACGAGTTCA

upper sequence: Vv11s0016g01060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G110968_T02 (Zea mays), 3'ss of exon 1
----gtgagttcaagttcgttcttttta---ttttccagtattgaattttccttaatgggttggtgatgaaatggtgttttttccttcctttgat--tgcagACAGAAGTGATTTTTCTCGGGCAACTGAGGCACCCGCATCTTGTCAAGCTGATCGGGTATTGTTGCGAGGACGAGCACAGGCTCCTGGTATACGAATACA
       | | |      || ||    |     | || || ||||  |     || | |  || | ||  | |  | | ||    |   |||| |  | ||| | || || ||||| || ||||| |||||||| ||||| ||||||||||| ||||| || || | | |||||||||||||||| || || ||||| | ||
cttaaacaatactgtactgtactaaggaaacgctgcctgtgttgacctgcaactacttg--tgattattcacttatttgttcgtttgtttttgctggtacagGCTGAGGTCATTTTCCTTGGGCAGCTGAGGCATCCGCACCTTGTCAAGCTCATCGGCTACTGCTACCAGGACGAGCACAGGCTTCTCGTGTACGAGTTCA

upper sequence: Vv11s0016g01060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G166027_T01 (Zea mays), 3'ss of exon 1
----gtgagttcaagttcgttctttttatttt--ccagtattgaattttccttaatgggttggtgatgaaatggtgttttttccttcctttgattgcagACAGAAGTGATTTTTCTCGGGCAACTGAGGCACCCGCATCTTGTCAAGCTGATCGGGTATTGTTGCGAGGACGAGCACAGGCTCCTGGTATACGAATACA
    ||  |  |  |  ||| |  | |  | |  | || ||       | |||||||   |   |||| |  | ||  |            |  ||||| | || ||| | |  || |||   |||| |||||||||||| || ||||| ||||||||  | |||||||||||||| ||| | ||||| ||||| ||||
gtacgtacggacgcgcgcgtgcactgtgctgtggctagcatgcgtgcgtgcttaatg--ctaacgatggatggatggat------------ggatgcagGCCGAGGTGGTGTACCTGGGGATGCTGAAGCACCCGCATCTGGTGAAGCTCATCGGGTACGGCTGCGAGGACGAGCAGAGGATGCTGGTGTACGAGTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttccttaatgggttggtgatgaaatggtgttttttccttcctttgattgcagACAGAAGTGATTTTTCTCGGGCAACTGAGGCACCCGCATCTTGTCAAGCTGATCGGGTATTGTTGCGAGGACGAGCACAGGCTCCTGGTATACGAATACA
                              tgttttttccttcctt  CT-rich tract
                              tgtttttt  TA-rich tract