1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctttaataatatcccgcaaagaataccctttatttgagtcaaactgtggaagcaatattttccattgatgtaacatttgtttatttattttttgaatcagGTTTTAGTGAGCTGAAGCAATTATGTTCGCTTCTAGACTTTCACGAGTTGGAGCTTGGACGGTCAAAGAGCTCTGTAAAG
species | Vitis vinifera |
transcript | Vv11s0016g00530.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
gtggaagcaatattttccattgatgtaacatttgtttatttattttttgaatcagGTTTTAGTGAGCTGAAGCAATTATGTTCGCTTCTAGACTTTCACGAGTTGGAGCTTGGACGGTCAAAGAGCTCTGTAAAG
atgtaac putative branch site (score: 3)
tttatttatttttt putative PPT
attgatgtaacatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttaataatatcccgcaaagaataccctttatttgagtcaaactgtggaagcaatattttccattgatgtaacatttgtttatttattttttgaatcagGTTTTAGTGAGCTGAAGCAATTATGTTCGCTTCTAGACTTTCACGAGTTGGAGCTTGGACGGTCAAAGAGCTCTGTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - cccgcaa
- - - - - - - - - -agaatac
- - - - - - - - - - - - - - - - - - - tcaaact
- - - - - - - - - - - - - - - - - - - - - - - - gaagcaa