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...tattttttaatttctaaatttatattgttattgccctataattttatatggtctttgttgctttctaaattttatattgcttcttccctttttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGAAATAGTGAAGCTGAGCCACAAGCAGAAGCTTGTTGTCAATTAACCCAGG
species | Vitis vinifera |
transcript | Vv10s0405g00020.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGAEST: gi|110709185|gb|EE084422.1|EE084422
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGAEST: gi|110718449|gb|EE095298.1|EE095298
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGAEST: gi|161711776|gb|FC058722.1|FC058722
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG ATGTCAGAGTTAAGTEST: gi|161720393|gb|FC070185.1|FC070185
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGT
EST: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGAEST: gi|161714917|gb|FC064539.1|FC064539
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGAEST: gi|161715770|gb|FC066174.1|FC066174
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGAEST: gi|110712226|gb|EE089603.1|EE089603
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGAEST: gi|33403466|gb|CF209093.1|CF209093
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGAEST: gi|110722059|gb|EE097960.1|EE097960
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGAEST: gi|110699863|gb|EE077248.1|EE077248
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGAEST: gi|110712662|gb|EE087902.1|EE087902
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGAEST: gi|110696026|gb|EE074715.1|EE074715
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
EST: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAG ATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
genomic: TCTATGCGAACCGCAGTTCCGATACTCGCGAAAGCAAGCGGGAGGAGAAGgtttttattc ... tttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGA
atatggtctttgttgctttctaaattttatattgcttcttccctttttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGAAATAGTGAAGCTGAGCCACAAGCAGAAGCTTGTTGTCAATTAACCCAGG
ttctaaa putative branch site (score: 2)
ttttatattgcttctt CT-rich tract
ttgctttctaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttttaatttctaaatttatattgttattgccctataattttatatggtctttgttgctttctaaattttatattgcttcttccctttttttgacagATGTCAGAGTTAAGTAAGCTCATCCGAGAGTTAAAATCAATACTTTATGGAAATAGTGAAGCTGAGCCACAAGCAGAAGCTTGTTGTCAATTAACCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - -tgcccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctttc