Sequence
atgc intronic sequence ATGC exonic sequencegtaagttttctcctactttttcagtagaagggaaggctcagtagcctagtaattcatgtttgacgttttgatacaagaggggttttgtgttcctcagTTTCTTCAAGGAGTGCCCTCATCCAGATGATAAGCAAAGAAAGGAGTTGAGCCGTGAATTAGGGTTGGAGCCTTTACAAGTCAAATTTTGGTTCCAAAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G45070.1 (Glycine max), 3'ss of exon 1
----------------------------------------------------------gtaagttttctcctactttttca-gtagaagggaaggctcagtagcctagtaattcatgtttgacgttttgatacaagaggg------gttttgtgttcctcagTTTCTTCAAGGAGTGCCCTCATCCAGATGATAAGCAAAGAAAGGAGTTGAGCCGTGAATTAGGGTTGGAGCCTTTACAAGTCAAATTTTGGTTCCAAAAC
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gtacgtaatatcatgaaaccttaatttgttccaatacatcactctttatatatatctgatgatgataataaaacacacacgcatacacacacacacacatatatatatatatgtatgtttgcttagttggtattatgttgttttcaactttacttttatcagCTTCTTCAAGCAGTGTCCTCACCCGGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGCTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAAC
upper sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G00570.1 (Glycine max), 3'ss of exon 1
-----------------------gtaagttttctcctactt-----tttcagtagaagggaaggctcagtagcctagtaattcatgtttgacgttttgatacaagaggg------gttttgtgttcctcagTTTCTTCAAGGAGTGCCCTCATCCAGATGATAAGCAAAGAAAGGAGTTGAGCCGTGAATTAGGGTTGGAGCCTTTACAAGTCAAATTTTGGTTCCAAAAC
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gtacgtgatattttatatgaaaccttaatttgttcctacacatgactctttatatatatcatatctgatgataatagca-tatatgtttgcttacttggtattatattgttttctactttactttcatcagCTTCTTCAAGCAGTTTCCTCACCCGGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGCTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcctagtaattcatgtttgacgttttgatacaagaggggttttgtgttcctcagTTTCTTCAAGGAGTGCCCTCATCCAGATGATAAGCAAAGAAAGGAGTTGAGCCGTGAATTAGGGTTGGAGCCTTTACAAGTCAAATTTTGGTTCCAAAAC
ttttgat putative branch site (score: 4)
tgttcctc putative PPT
taattcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttttctcctactttttcagtagaagggaaggctcagtagcctagtaattcatgtttgacgttttgatacaagaggggttttgtgttcctcagTTTCTTCAAGGAGTGCCCTCATCCAGATGATAAGCAAAGAAAGGAGTTGAGCCGTGAATTAGGGTTGGAGCCTTTACAAGTCAAATTTTGGTTCCAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG