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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcccgaatgccgctctgtctagaaagtggttgagcccgtaactcggccgagtcactaactatttttcattaactgagtcaaatgcagGGAAGGAGGTCTGCTCCTGAGTTTACTGCAGTGCAACTTGCTCCTCTGATCTCTTGAGGTTCGAAACATTTAAGTTCAAACTATGAAATGTACCTATATT

Basic information

species Vitis vinifera
transcript Vv10s0116g00250.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110421279|gb|EC987575.1|EC987575
EST:     AGCCGGAAACGAAAGCGTGGAGAAGAAGATGATCCATCGATCTCCGAAAG                         GGAAGGAGGTCTGCTCCTGAGTTTACTGCAGTGCAACTTGCTCCTCTGATC
genomic: AGCCGGAAACGAAAGCGTGGAGAAGAAGATGATCCATCGATCTCCGAAAGgtaagctccc ... tcaaatgcagGGAAGGAGGTCTGCTCCTGAGTTTACTGCAGTGCAACTTGCTCCTCTGATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcccgtaactcggccgagtcactaactatttttcattaactgagtcaaatgcagGGAAGGAGGTCTGCTCCTGAGTTTACTGCAGTGCAACTTGCTCCTCTGATCTCTTGAGGTTCGAAACATTTAAGTTCAAACTATGAAATGTACCTATATT
                       taactatttttcatta  TA-rich tract