Sequence
atgc intronic sequence ATGC exonic sequence...atttagtgatctctgaaggagtagtggagggatgttatggagccaaaccttcagaaattgggtggaatttctgtatttatctttaggaatttttgtgcagTGCTGGAATGGAGGCGGGGATGGCATTGCAACTGCAACAATCATGCTTCTTGGGGATACCTGCACTCGTGGCTGTAGATTTTGTGCTGTGAAAACCAGTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0071g01020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G42600.1 (Glycine max), 3'ss of exon 2
-----atttagtgatctctgaaggagtagtggagggatgttatggagccaaaccttcagaaattgggtggaatttctgtattt-atctttaggaatttttgtg--cagTGCTGGAATGGAGGCGGGGATGGCATTGCAACTGCAACAATCATGCTTCTTGGGGATACCTGCACTCGTGGCTGTAGATTTTGTGCTGTGAAAACCAGTA
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gttttattttattattttttaa--aattcttttgcattccctcttcccttctcccttggattcttatttattgttgagctttggattgttatgtgtgtgtgtggacagTGTTGGAATGGAGGCGGAGATGGCATTGCAACTGCGACAATCATGGTTCTTGGGGATACTTGCACGCGTGGGTGTAGGTTTTGTGCTGTGAAGACCAGCA
upper sequence: Vv10s0071g01020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G24430.1 (Glycine max), 3'ss of exon 1
atttagtgatctctgaaggagtagtggagggatgttatggagccaaaccttcagaaat-tgggtggaatttctgtatttatctttaggaatttttgtg--cagTGCTGGAATGGAGGCGGGGATGGCATTGCAACTGCAACAATCATGCTTCTTGGGGATACCTGCACTCGTGGCTGTAGATTTTGTGCTGTGAAAACCAGTA
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---aaggaatcgcacccgtgaccttttccctcttcccttctcccttgtattgttatttgttgttgagctttggattgttatgtgtgtgtgtgtgtgtggacagTGTTGGAATGGAGGTGGAGATGGCATTGCAACTGCGACAATCATGCTTCTTGGGGATACTTGCACACGTGGGTGTAGGTTTTGTGCTGTGAAGACCAGCA
upper sequence: Vv10s0071g01020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G08415.1 (Arabidopsis thaliana), 3'ss of exon 1
--------------------------------------------------------atttagtgatctctga-----aggagtagtggagggatgttatgg-agccaaaccttcagaaattggg---tggaatttctgtatttatctttaggaatttt-tgtgcagTGCTGGAATGGAGGCGGGGATGGCATTGCAACTGCAACAATCATGCTTCTTGGGGATACCTGCACTCGTGGCTGTAGATTTTGTGCTGTGAAAACCAGTA
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gttagctatttcgattttgtgtttatgatctcgaagattgttattaaaatgtatcggttttatgaattgtgggtatgagaaattatgagtaaactacatgctagttcaaccatcattactctaaatttgtgatttttttctgaaaattagattatgtgatgtgtagTGTTGGAATGGAGGTGGTGATGGTGTAGCAACTGCAACCATCATGGTTCTTGGTGATACTTGTACTCGTGGCTGTAGATTCTGTGCTGTTAAAACAAGTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaccttcagaaattgggtggaatttctgtatttatctttaggaatttttgtgcagTGCTGGAATGGAGGCGGGGATGGCATTGCAACTGCAACAATCATGCTTCTTGGGGATACCTGCACTCGTGGCTGTAGATTTTGTGCTGTGAAAACCAGTA
tttttgt CT-rich tract
tatttatctttaggaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atttagtgatctctgaaggagtagtggagggatgttatggagccaaaccttcagaaattgggtggaatttctgtatttatctttaggaatttttgtgcagTGCTGGAATGGAGGCGGGGATGGCATTGCAACTGCAACAATCATGCTTCTTGGGGATACCTGCACTCGTGGCTGTAGATTTTGTGCTGTGAAAACCAGTA
- - - - - ctctgaa
- - - - - - - - - - - - tggaggg
- - - - - - - - - - - - - - - - - - - - - ccaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - agaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtgga