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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgattgtttgaaaaaaaaaaaaggaagcattatatttttattaagtgataataatttgttgtaaggttgtaaatttgttgattgttgattgtttgaaaatgtcttatgtttcatttacattgaagTGGGTGGAGTGACGCAAAATTGCAGATCATCATCCACGCAAAATTGTTGATTGTTGATTTAGAACTCCAAACCCACTCACAAATCCTCCCCCACCAGCCC

Basic information

species Vitis vinifera
transcript Vv10s0042g00210.t01
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttgttgattgttgattgtttgaaaatgtcttatgtttcatttacattgaagTGGGTGGAGTGACGCAAAATTGCAGATCATCATCCACGCAAAATTGTTGATTGTTGATTTAGAACTCCAAACCCACTCACAAATCCTCCCCCACCAGCCC
            tgttgat  putative branch site (score: 4)
                                      tttcattt  putative PPT
                                 ttatgtttcattta  TA-rich tract