Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcatttgtctctgtttttgaatttcatatctaagttgtacttctttcttgtaccttctgagctgataactttgctattccattgttgtactcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCGTACAACAATCTTTTCCCCTGAAGGGCGTCTCTACCAAGTCGAGTATGCA

Basic information

species Vitis vinifera
transcript Vv10s0042g00070.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0042g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G06350.2 (Glycine max), 3'ss of exon 1
ctcatttgtctctgtttttgaatttcatatctaagttgtacttctttcttgtaccttctgagctgataactttgctattccattgttgtactcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCGTACAACAATCTTTTCCCCTGAAGGGCGTCTCTACCAAGTCGAGTATGCA-------------
       || |  |  ||| ||||   | |||   || | | ||    | | |  | |     | ||  ||||  | |||  || |  |||| || | |||     |  ||   ||| |  || |||||||||||| || ||||| ||||||||||||||||| ||||||||||| ||||| |||||||| || ||||||             
-----aagtattagaattttaattctttctctcctttttgcatcaaagtaggaaatacctgtttaatttctttcattttcatttttgctacttttcataga-----tcagTAGTCAGAG--AT-CAAAATGTCTCGAAGATATGACAGCCGTACAACAATCTTCTCCCCTGAAGGACGTCTTTACCAAGTGGAATATGCAATGGAGGCTATTG

upper sequence: Vv10s0042g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G06350.1 (Glycine max), 3'ss of exon 1
ctcatttgtctctgtttttgaatttcatatctaagttgtacttctttcttgtaccttctgagctgataactttgctattccattgttgtactcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCGTACAACAATCTTTTCCCCTGAAGGGCGTCTCTACCAAGTCGAGTATGCA--------
   |   || |  |  ||| ||||   | |||   || | | ||    | | |  | |     | ||  ||||  | |||  || |  |||| || | |||     |  ||   ||| |  || |||||||||||| || ||||| ||||||||||||||||| ||||||||||| ||||| |||||||| || ||||||        
gaaaaaagtattagaattttaattctttctctcctttttgcatcaaagtaggaaatacctgtttaatttctttcattttcatttttgctacttttcatagA-----TCAGTAGTCAGAG--AT-CAAAATGTCTCGAAGATATGACAGCCGTACAACAATCTTCTCCCCTGAAGGACGTCTTTACCAAGTGGAATATGCAATGGAGGC

upper sequence: Vv10s0042g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G31360.3 (Glycine max), 3'ss of exon 1
ctcatttgtctctgtttttgaatttcatatctaagttgtacttctttcttgtaccttctgagctgataactttgctattccatt-gttgtactcttgacagACTTATTTCGTTTCCAGTGTGATA-CAAAATGTCTCGGAGGTATGATAGCCGTACAACAATCTTTTCCCCTGAAGGGCGTCTCTACCAAGTCGAGTATGCA-------------
                   | |||  |  | ||| |  | | || || ||| | |     ||   ||| || |   ||||| ||  ||    |||||  |   |   |   |    | |  || | |||||||||||| || ||||| ||||||||||||||||| ||||| ||||| ||||| |||||||| || ||||||             
---------------aaaagtattagaattttaattctttcctcctttttgcatcaaactaggaaatacctgtttaattcctttcatttccatcttgctactttgcatagatcagTAATCAGAGATCAAAATGTCTCGAAGATATGACAGCCGTACAACAATCTTCTCCCCGGAAGGACGTCTTTACCAAGTGGAATATGCAATGGAGGCTATTG

upper sequence: Vv10s0042g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G19170.1 (Glycine max), 3'ss of exon 1
ctcatttgtctctgtttttgaatttcatatctaagttgtacttctttcttgtaccttctgagctgataactttgctat-tccattgttgtactcttgacagACTTATTTCG--TTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCGTACAACAATCTTTTCCCCTGAAGGGCGTCTCTACCAAGTCGAGTATGCA----------------------
                         | | | || |     ||| |||| | ||  ||||        | || | || | | ||||  | | || |        ||  || |   |   |        ||| |||||| | || ||||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||                      
-------------------------cttctataggagtgccttttttcatttattttctttttcctaagctatactttattcatttctctcctttccttgtgtttgctttgaactaaaaactcagATCAATATGTCTAGAAGATATGATAGCCGTACAACAATCTTCTCCCCCGAAGGACGTCTTTACCAAGTGGAGTATGCAATGGAGGCCATTGGGAATGCTG

upper sequence: Vv10s0042g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G19170.2 (Glycine max), 3'ss of exon 1
ctcatttgtctctgtttttgaatttcatatctaagttgtacttctttcttgtaccttctgagctgataactttgctattccattgttgtactcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCGTACAACAATCTTTTCCCCTGAAGGGCGTCTCTACCAAGTCGAGTATGCA---------------------------------------
                                   || | | | | | || |   | || |||| |||  ||    ||| |  |  | | ||  ||   |  ||       |   |        ||| |||||| | || ||||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||                                       
-----------------------------------tttttcatttattttctttttcctaagct-atactttattcatttctctcctttccttgtgtttgctttga---actaaaaactcagatcaatatgtctagaagATATGATAGCCGTACAACAATCTTCTCCCCCGAAGGACGTCTTTACCAAGTGGAGTATGCAATGGAGGCCATTGGGAATGCTGGAACTGCAATAGGGATC

upper sequence: Vv10s0042g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G31360.2 (Glycine max), 3'ss of exon 1
ctcatttgtctctgtttttgaatttcatatctaagttgtacttctttcttgtaccttctgagctgataactttgctattccattgttgtactcttgacagACTTATTTCGTTTC-CAGTGTGATA-CAAAATGTCTCGGAGGTATGATAGCCGTACAACAATCTTTTCCCCTGAAGGGCGTCTCTACCAAGTCGAGTATGCA--------
                   | |||  |  | ||| |  | | || || ||| | |     ||   ||| || |   ||||| ||  | | |   |  |    ||   | | |    | |  || | |||||||||||| || ||||| ||||||||||||||||| ||||| ||||| ||||| |||||||| || ||||||        
----------gaaaaaaaagtattagaattttaattctttcctcctttttgcatcaaactaggaaatacctgtttaattcctttcatttccatcttgctactttgcatagATCAGTAATCAGAGATCAAAATGTCTCGAAGATATGACAGCCGTACAACAATCTTCTCCCCGGAAGGACGTCTTTACCAAGTGGAATATGCAATGGAGGC

upper sequence: Vv10s0042g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G43710.2 (Glycine max), 3'ss of exon 1
ctcatttgtctctgtttttgaatttcatatctaagttgtacttctttcttgtaccttctgagctgataactttgctattccattgttgtactcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCGTACAACAATCTTTTCCCCTGAAGGGCGTCTCTACCAAGTCGAGTATGCA---------------------------------------
                                   ||   | | | | || |   | || |||| |||  ||    |||||  |  | | ||  ||   |     ||    |   |        ||| |||||||| || |||||||||||||| |||||||| ||||||||||| ||||| |||||||| || |||||                                        
-----------------------------------tttctcatttattttctttttcctaagct-atactttattcattcctctcctttccttctgtttg---cgttggactaaaaactcagatcaatatgtctcgaagATATGATAGCCGTACTACAATCTTCTCCCCTGAAGGACGTCTTTACCAAGTGGAATATGCTATGGAGGCCATTGGGAATGCTGGTACTGCAATAGGGATC

upper sequence: Vv10s0042g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G43710.1 (Glycine max), 3'ss of exon 1
ctcatttgtctctgtttttgaatttcatatctaagttgtacttctttcttgtaccttctgagctgataactttgctattccattgttgtactcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCGTACAACAATCTTTTCCCCTGAAGGGCGTCTCTACCAAGTCGAGTATGCA----------------------
            | | |  || |  | | ||| | || |  |  |||        | || |||| |||  ||    |||||  |  | | ||  ||   |     ||    |   |        ||| |||||||| || |||||||||||||| |||||||| ||||||||||| ||||| |||||||| || |||||                       
----------cttctataggagtgccttttctcatttattttctttt--------tcctaagct-atactttattcattcctctcctttccttctgtttg---cgttggactaaaaactcagATCAATATGTCTCGAAGATATGATAGCCGTACTACAATCTTCTCCCCTGAAGGACGTCTTTACCAAGTGGAATATGCTATGGAGGCCATTGGGAATGCTG

upper sequence: Vv10s0042g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G22110.1 (Arabidopsis thaliana), 3'ss of exon 1
ctcatttgtctctgtttttgaatttcatatctaagttgtacttctttcttgtaccttctgagctgataactttgctattccattgttgtactcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCGTACAACAATCTTTTCCCCTGAAGGGCGTCTCTACCAAGTCGAGTATGCA------------------
          | || | | |||   | ||  |   | ||  ||        | || | ||  || ||    |    | |   |||| |||  |   |   | || ||  | | |  ||||  || | |||||||||||| |||||||||||||| |||||||| || || ||||| ||||| ||||| || ||||||||                   
----------tgtgatgtcgaaaaccctagttt--tcgtgttttcggaacttgccctgtgt-ctaatggagt-atgaattagttgt-gtagacc-aatgcatttgttgtggtgcagGTGT--TAAAGAATGTCTCGGAGATATGATAGCCGTACCACAATCTTCTCGCCAGAAGGTCGTCTTTACCAGGTAGAGTATGCTATGGAGGCCATTGGAAAC

upper sequence: Vv10s0042g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G15165.1 (Arabidopsis thaliana), 3'ss of exon 1
ctcatttgtctctgtttttgaatttcatatctaagttgtacttctttcttgtaccttctgagctgataacttt-gct-attccattgttgtactcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCGTACAACAATCTTTTCCCCTGAAGGGCGTCTCTACCAAGTCGAGTATGCA------------------
          | | |||   |  |  ||| | |   |  ||||        ||       || ||  | |||| ||| ||   |||   ||  |  |  |   |||  || || |  ||  || | |||||||||||||||||||||||| || || || ||||| || || ||||| ||||||||||| || || |||||                   
----------tttctttggaagctatataccca---taaacttaaaatgaata------aagatggaagctttagctgatataatttgggtgtttctttctttcttccttggtgtgaagC-TGTTTCAAAATGTCTCGGAGGTATGATAGTCGCACCACGATCTTCTCACCGGAAGGTCGTCTCTACCAGGTTGAATATGCTATGGAAGCTATTGGCAAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77578293|gb|DV217927.1|DV217927
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|110688164|gb|EE066404.1|EE066404
EST:     CCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|110420336|gb|EC986608.1|EC986608
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATCTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|294966290|gb|GW837541.1|GW837541
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|110700073|gb|EE077693.1|EE077693
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|77583085|gb|DV220578.1|DV220578
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|161707995|gb|FC056987.1|FC056987
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|349815586|gb|FQ400742.1|FQ400742
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTCCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|77585436|gb|DV221806.1|DV221806
EST:     CTCGGCTCTGTGCTCTCC-AATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|110723091|gb|EE100009.1|EE100009
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|28963672|gb|CB342705.1|CB342705
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|161720914|gb|FC070660.1|FC070660
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|294966510|gb|GW837645.1|GW837645
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGGTTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|71875549|gb|DT024604.1|DT024604
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|27586397|gb|CB009092.1|CB009092
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|87585148|gb|DY473985.1|DY473985
EST:     GTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: GTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|27583551|gb|CB006246.1|CB006246
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|349809219|gb|FQ398992.1|FQ398992
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|110427611|gb|EC994059.1|EC994059
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|349833171|gb|FQ416549.1|FQ416549
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|349816962|gb|FQ405088.1|FQ405088
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|161711030|gb|FC061132.1|FC061132
EST:     TTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: TTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
EST: gi|349815898|gb|FQ401054.1|FQ401054
EST:     CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAG                         ACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG
genomic: CTCGGCTCTGTGCTCTCCAAATTCTGATTTCTCCCTCGTCAGgtctctcttt ... ctcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttgtaccttctgagctgataactttgctattccattgttgtactcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCGTACAACAATCTTTTCCCCTGAAGGGCGTCTCTACCAAGTCGAGTATGCA
                  tgataac  putative branch site (score: 2)
                                           tactctt  putative PPT
                    ataacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctcatttgtctctgtttttgaatttcatatctaagttgtacttctttcttgtaccttctgagctgataactttgctattccattgttgtactcttgacagACTTATTTCGTTTCCAGTGTGATACAAAATGTCTCGGAGGTATGATAGCCGTACAACAATCTTTTCCCCTGAAGGGCGTCTCTACCAAGTCGAGTATGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - tgtctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccatt