1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aacaatatcccagtaaaggtttttatttggttatttttatttgttattttaccttttatttctcattgtgcatttgtaacttgttttgtgctatttgtagGTTAAGCAACTCCTGGAGAAAAATGAGAAAGGGCATGTTATTGCCACTTGTCGTAATCCTGATGGGGCAACTGCACTTCTTGATTTAAAAAATGAGTTTG
species | Vitis vinifera |
transcript | Vv10s0003g05770.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGGCGTTTCCATGGTTCAGGGAGCTTCCAGAGGAATTGGCCTTGAGTTT GTTAAGCAACTCCTGGAGAAAAATGAGAAAGGGCATGTTATTGCCACTTGTEST: gi|294964556|gb|GW838359.1|GW838359
genomic: GTGGCGTTTCCATGGTTCAGGGAGCTTCCAGAGGAATTGGCCTTGAGTTTgtgagcattt ... ctatttgtagGTTAAGCAACTCCTGGAGAAAAATGAGAAAGGGCATGTTATTGCCACTTGT
EST: GTGGCGTTTCCATGGTTCAGGGAGCTTCCAGAGGAATTGGCCTTGAGTTT GTTAAGCAACTCCTGGAGAAAAATGAGAAAGGGCATGTTATTGCCACTTGTEST: gi|77585998|gb|DV222098.1|DV222098
genomic: GTGGCGTTTCCATGGTTCAGGGAGCTTCCAGAGGAATTGGCCTTGAGTTTgtgagcattt ... ctatttgtagGTTAAGCAACTCCTGGAGAAAAATGAGAAAGGGCATGTTATTGCCACTTGT
EST: GTGGCGTTTCCATGGTTCAGGGAGCTTCCAGAGGAATTGGCCTTGAGTTT GTTAAGCAACTCCTGGAGAAAAATGAGAAAGGGCATGTTATTGCCACTTGTEST: gi|110416872|gb|EC982880.1|EC982880
genomic: GTGGCGTTTCCATGGTTCAGGGAGCTTCCAGAGGAATTGGCCTTGAGTTTgtgagcattt ... ctatttgtagGTTAAGCAACTCCTGGAGAAAAATGAGAAAGGGCATGTTATTGCCACTTGT
EST: GTGGCGTTTCCATGGTTCAGGGAGCTTCCAGAGGAATTGGCCTTGAGTTT GTTAAGCAACTCCTGGAGAAAAATGAGAAAGGGCATGTTATTGCCACTTGTEST: gi|71873455|gb|DT022510.1|DT022510
genomic: GTGGCGTTTCCATGGTTCAGGGAGCTTCCAGAGGAATTGGCCTTGAGTTTgtgagcattt ... ctatttgtagGTTAAGCAACTCCTGGAGAAAAATGAGAAAGGGCATGTTATTGCCACTTGT
EST: GTGGCGTTTCCATGGTTCAGGGAGCTTCCAGAGGAATTGGCCTTGAGTTT GTTAAGCAACTCCTGGAGAAAAATGAGAAAGGGCATGTTATTGCCACTTGT
genomic: GTGGCGTTTCCATGGTTCAGGGAGCTTCCAGAGGAATTGGCCTTGAGTTTgtgagcattt ... ctatttgtagGTTAAGCAACTCCTGGAGAAAAATGAGAAAGGGCATGTTATTGCCACTTGT
attttaccttttatttctcattgtgcatttgtaacttgttttgtgctatttgtagGTTAAGCAACTCCTGGAGAAAAATGAGAAAGGGCATGTTATTGCCACTTGTCGTAATCCTGATGGGGCAACTGCACTTCTTGATTTAAAAAATGAGTTTG
ttgtaac putative branch site (score: 2)
ttttatttctcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaatatcccagtaaaggtttttatttggttatttttatttgttattttaccttttatttctcattgtgcatttgtaacttgttttgtgctatttgtagGTTAAGCAACTCCTGGAGAAAAATGAGAAAGGGCATGTTATTGCCACTTGTCGTAATCCTGATGGGGCAACTGCACTTCTTGATTTAAAAAATGAGTTTG
aacaata
- - - - cccagta
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