Sequence
atgc intronic sequence ATGC exonic sequence...caatgattagtccaattttgtaaggccctttgttatgattttgaggcactacatggcacaattttgcatcgtagcctactcccctctcttgattcaatagTTGGTGAATTGTTGGCTAAGGAGATACATCTTAAGTCTCAGGCATAAAAAGAAATTTTCTCCACACGTTATACATCTGATTTGGAAGTACCTTCTAGGCC
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcactacatggcacaattttgcatcgtagcctactcccctctcttgattcaatagTTGGTGAATTGTTGGCTAAGGAGATACATCTTAAGTCTCAGGCATAAAAAGAAATTTTCTCCACACGTTATACATCTGATTTGGAAGTACCTTCTAGGCC
tcttgat putative branch site (score: 4)
cctactcccctctctt CT-rich tract
acaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caatgattagtccaattttgtaaggccctttgttatgattttgaggcactacatggcacaattttgcatcgtagcctactcccctctcttgattcaatagTTGGTGAATTGTTGGCTAAGGAGATACATCTTAAGTCTCAGGCATAAAAAGAAATTTTCTCCACACGTTATACATCTGATTTGGAAGTACCTTCTAGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - taaggcc
- - - - - - - - - - - - - - - - - - - - - - - - - acatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgca