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...gtgtgaatcttgtaatgaatcaaaatgtgtgggcaatttatgccttaaattgagccaatttgtcaatatttaggattttaagatgttttatgatgtcaagTTTGGGAGAAAGAAGGAGCCCGAGAAGCACGATGCGGCAGAGAGTTCTGGTAAACCTGTGTCAAATGGGAATTCTTCAAATGGGACAGCTAATGGGGGTG
species | Vitis vinifera |
transcript | Vv10s0003g03500.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTTTCGTCAATGGCAGACGAGCCTTTTCTCACTCGCTGGTCCTTTCAG TTTGGGAGAAAGAAGGAGCCCGAGAAGCACGATGCGGCAGAGAGTTCTGGTEST: gi|37189203|gb|CF608552.1|CF608552
genomic: GATTTTCGTCAATGGCAGACGAGCCTTTTCTCACTCGCTGGTCCTTTCAGgtgccaattc ... tgatgtcaagTTTGGGAGAAAGAAGGAGCCCGAGAAGCACGATGCGGCAGAGAGTTCTGGT
EST: ATTTTCGTCAATGGCAGACGAGCCTTTTCTCACTCGCTGGTCCTTTCAG TTTGGGAGAAAGAAGGAGCCCGAGAAGCACGATGCGGCAGAGAGTTCTGGT
genomic: ATTTTCGTCAATGGCAGACGAGCCTTTTCTCACTCGCTGGTCCTTTCAGgtgccaattc ... tgatgtcaagTTTGGGAGAAAGAAGGAGCCCGAGAAGCACGATGCGGCAGAGAGTTCTGGT
taaattgagccaatttgtcaatatttaggattttaagatgttttatgatgtcaagTTTGGGAGAAAGAAGGAGCCCGAGAAGCACGATGCGGCAGAGAGTTCTGGTAAACCTGTGTCAAATGGGAATTCTTCAAATGGGACAGCTAATGGGGGTG
aatatttaggatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgaatcttgtaatgaatcaaaatgtgtgggcaatttatgccttaaattgagccaatttgtcaatatttaggattttaagatgttttatgatgtcaagTTTGGGAGAAAGAAGGAGCCCGAGAAGCACGATGCGGCAGAGAGTTCTGGTAAACCTGTGTCAAATGGGAATTCTTCAAATGGGACAGCTAATGGGGGTG
- - - - - - - - -aatcaaa
- - - - - - - - - - - - - gtgtggg
- - - - - - - - - - - - - - - - - - - tatgcct
- - - - - - - - - - - - - - - - - - - - - - - aaattga