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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttcattacctcttcctcatttttctgtcataacaaatggagggaggtgggggtttaggcctgatctaatggggtttatttttttgtttggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCG

Basic information

species Vitis vinifera
transcript Vv10s0003g03150.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g03150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA14G03380.1 (Glycine max), 3'ss of exon 1
ttttcattacctcttcctcatttttctgtcataacaaatggagggaggtgggggtttaggcctgatctaatggggtttatttttttgtttggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCG
   |   ||  | ||  |  ||||| |||   |   | |     ||| || |  | | |   | | |   ||     | |  || || ||| |   ||||||||||||||||||||| ||||| || ||||| ||  | ||  ||||||||||||| ||||||||||||||||| ||||||||||| || ||||| || |
--gtgggtaa-tgttaatggtttttgtgtttgatttagtttgcagag-tgagtttgtggaatttaacatgtgaa---tgtgattatggttgaa---gcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTG

upper sequence: Vv10s0003g03150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G10220.1 (Glycine max), 3'ss of exon 1
ttttcattacctcttcctcatttttctgtcataacaaatggagggaggtgggggtttaggcctgatctaatggggtttatttttttgtttggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCG
  | | | |  |   |  |||||     ||      | |       | |   | |||          ||   ||   | |||| || | || || |||||||||||||||||||||| || ||||| ||||| ||  ||||  | ||| |||| || ||||||||||| ||||||||||||||||| || ||||||||||
-gtgcgtaagattcacaccatttggtgttcgatttcattttcctctgttaatgattt---------ttacgaggtggtgttttgttatgtgtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAGCACCCCAAGATCTACCGAATGAAGCTCTGGGCCACCAACGAGGTTCGCG

upper sequence: Vv10s0003g03150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G45430.1 (Glycine max), 3'ss of exon 1
ttttcattacctcttcctcatttttctgtcataacaaatggagggaggtgggggtttaggcctgatctaatggggtttatttttttgtttggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCG
  |   | |  |       |||| | | | ||      ||||| |   || |  | | |   | | |   ||    || |  || || ||| |   ||||||||| ||||||||||| ||||| || ||||| ||  | ||  ||||||||||||| ||||||||||||||||| |||||||| || || ||||| || |
-gtgagtaatgttaatggtatttgtgtttgattttgtttggagag---tgagtttgtggattttaacgtgtga---ttgtgattatggttgaa---gcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCAACTAACGAGGTCCGTG

upper sequence: Vv10s0003g03150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G13270.1 (Glycine max), 3'ss of exon 1
-ttttcattacctcttcctcatttttctgtcataacaa-atggagggaggtgggggtttaggcctgatctaatggggtttatttttttgtttggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCG-
  ||| ||||  | | | |   |  |   |  |    |    | | | |    | ||| |     |||   ||   |||| |||||| || ||      ||||||||||||||||||||||| || || ||||| ||  | || || |||| |||||| ||||||||| | |||||||| |||||||| |||||||| || | 
ccttttattaattttgcttttctagttcatttttctgatgctgtgagtgtgaagagttcataatggat--gataatgttt-ttttttggtatgttgaatcagtTTCACCAGTACCAGGTTGTTGGAAGGGCTCTTCCCACTGAAACTGATGTGCATCCTAAGATCTACAGGATGAAGCTGTGGGCCACCAATGAGGTCCGTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30127989|gb|CB913328.1|CB913328
EST:     GCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|77577178|gb|DV217287.1|DV217287
EST:     GCTTCTTC-AAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|71871567|gb|DT020622.1|DT020622
EST:     GAGAGAAGTAGCTTCTTC-AAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|161709735|gb|FC058453.1|FC058453
EST:     GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTT-ACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|110405774|gb|EC971324.1|EC971324
EST:     GAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|77583908|gb|DV220990.1|DV220990
EST:     GAGAGAAGTAGCTTCTTC-AAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|77586588|gb|DV222419.1|DV222419
EST:     GAGAGAAGTAGCTTCTTC-AAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|27583617|gb|CB006312.1|CB006312
EST:     GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|161718472|gb|FC064804.1|FC064804
EST:     AGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: AGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|110376595|gb|EC941655.1|EC941655
EST:     GAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|30325289|gb|CD008551.1|CD008551
EST:     AGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTGCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: AGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|71866233|gb|DT015288.1|DT015288
EST:     GAGAGAAGTAGCTTCTTC-AAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|77583161|gb|DV220615.1|DV220615
EST:     GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|71872578|gb|DT021633.1|DT021633
EST:     GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|71870661|gb|DT019716.1|DT019716
EST:     GAGAGAAGTAGCTTCTTC-AAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|110387390|gb|EC952051.1|EC952051
EST:     AGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: AGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|110406102|gb|EC971661.1|EC971661
EST:     GAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|27578831|gb|CB001526.1|CB001526
EST:     CTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: CTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|110374615|gb|EC939502.1|EC939502
EST:     GTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|87584790|gb|DY473816.1|DY473816
EST:     GAGAG-AGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|18459373|gb|BM437651.1|BM437651
EST:     GAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|30325604|gb|CD008866.1|CD008866
EST:     AGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: AGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|110410770|gb|EC976462.1|EC976462
EST:     GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|77585012|gb|DV221590.1|DV221590
EST:     GCTTCTTC-AAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|37189649|gb|CF608998.1|CF608998
EST:     CTTCTTC-AAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGA
genomic: CTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGA
EST: gi|71870822|gb|DT019877.1|DT019877
EST:     GAGAGAAGTAGCTTCTTC-AAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|71875989|gb|DT025044.1|DT025044
EST:     GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|77584511|gb|DV221320.1|DV221320
EST:     GAGAGAAGTAGCTTCTTC-AAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|27580506|gb|CB003201.1|CB003201
EST:     CTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: CTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|30133386|gb|CB918725.1|CB918725
EST:     GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|351026970|gb|FQ436623.1|FQ436623
EST:     AGAGAAGCT-GCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: AGAGAAG-TAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|110409711|gb|EC975381.1|EC975381
EST:     GAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|77577870|gb|DV217685.1|DV217685
EST:     GAGAGAAGTAGCTTCTTC-AAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|77584342|gb|DV221243.1|DV221243
EST:     GAGAGAAGTAGCTTCTTC-AAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|71871530|gb|DT020585.1|DT020585
EST:     GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|110689267|gb|EE065344.1|EE065344
EST:     CAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: CAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|27580390|gb|CB003085.1|CB003085
EST:     CTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: CTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|110358381|gb|EC922551.1|EC922551
EST:     CTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: CTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|71875022|gb|DT024077.1|DT024077
EST:     GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|110695933|gb|EE074518.1|EE074518
EST:     GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: GAGAGAAGTAGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
EST: gi|110684627|gb|EE062118.1|EE062118
EST:     AGCTTCTTC-ACATCTCTCCGTCAAGATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: AGCTTCTTCAAAATCTCTCCGTCAAGATGGTTACTTTCAGGgtaagtctat ... ggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggtgggggtttaggcctgatctaatggggtttatttttttgtttggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCG
                   atctaat  putative branch site (score: 3)
                              tttatttttttgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttcattacctcttcctcatttttctgtcataacaaatggagggaggtgggggtttaggcctgatctaatggggtttatttttttgtttggatgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - ctcttcc
- - - - - - - - - - - - -ctgtcat
- - - - - - - - - - - - - - - - aacaaat
- - - - - - - - - - - - - - - - - - - - - - - ggtgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaatgg