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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttttctgtcccaacatatggatggaagtgggttttttttatttttttttgggttttgacctgatctaatggggtttgttcgtttgtttgggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCG

Basic information

species Vitis vinifera
transcript Vv10s0003g03130.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g03130.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA14G03380.1 (Glycine max), 3'ss of exon 1
atttttctgtcccaacatatg-gatggaagtgggtttttt--ttatttttttttgggttttgacctgatctaatggggtttgttcgtttgtttgggtgt---gcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCG
                 |  |  |||  | ||| |||| |  ||  |||  ||||     |||  |  |  |||      |||   | || ||  |  |   ||||||||||||||||||||| ||||| || ||||| ||  | ||   |||||||||||| ||||||||||||||||| |||||||| || || ||||| || |
----------------gtgggtaatgttaatggtttttgtgtttgatttagtttgcagagtgagtttgtggaatttaacatgtgaatgtgattatggttgaagcagTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTG

upper sequence: Vv10s0003g03130.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G10220.1 (Glycine max), 3'ss of exon 1
atttttctgt-cccaacatatggatggaagtgggttttttttatttttttttgggttttgacctgatctaatggggtttgttcgtttgtttgggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCG
        || |  || ||    |       | |||   |||  ||||  |  | |  |||  |    ||   ||   ||||   || | ||  | |||||||||||||||||||||| || ||||| ||||| ||  ||||    ||| |||| || ||||||||||| |||||||||||||| || || ||||||||||
--------gtgcgtaagattcacaccatttggtgttcgatttcattttcctctgttaatgattt---ttacgaggtggtgttttgttatgtgtatttgcagTTTCACCAGTACCAGGTGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAGCACCCCAAGATCTACCGAATGAAGCTCTGGGCCACCAACGAGGTTCGCG

upper sequence: Vv10s0003g03130.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G45430.1 (Glycine max), 3'ss of exon 1
atttttctgtcccaacatatggatggaagtgggttttttttatttttttttgggttttgacctg-atctaatggggtttgttcgtttgtttgggtgt-gcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCG
                 ||  | |    ||   | | ||| ||||| ||| | |  |     ||    |  |   || || | ||   | ||| ||  ||||||||| ||||||||||| ||||| || ||||| ||  | ||   |||||||||||| ||||||||||||||||| |||||||| || || ||||| || |
------------gtgagtaatgttaatggtatttgtgtttgattttgtttggagagtgagtttgtggattttaacgtgtgattgtgattatggttgaagcagTTTCATCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCAACTAACGAGGTCCGTG

upper sequence: Vv10s0003g03130.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G13270.1 (Glycine max), 3'ss of exon 1
atttttctgtcccaacatatggatggaagtgggttttttttatttttttttgggttttgacctgatctaatggggtttgttcgtttgtttgggtgtg------cagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCG-
         |   |  |  |         | | |  ||||| |  |  | || || |  |       ||||||    |  |  ||| ||| ||| ||      ||||||||||||||||||||||| || || ||||| ||  | || |  |||| |||||| ||||||||| | |||||||| ||||| || |||||||| || | 
-------ccttttattaattttgcttttctagttcatttttctgatgctgtgagtgtgaagagttcataatggatgataatgtttttttttggtatgttgaatcagtTTCACCAGTACCAGGTTGTTGGAAGGGCTCTTCCCACTGAAACTGATGTGCATCCTAAGATCTACAGGATGAAGCTGTGGGCCACCAATGAGGTCCGTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110706824|gb|EE082690.1|EE082690
EST:     CAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: CAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|351020339|gb|FQ445946.1|FQ445946
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|71867935|gb|DT016990.1|DT016990
EST:     GTAGCTTCTTCCC-ATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: GTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|349813933|gb|FQ414167.1|FQ414167
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCTGAATGGTTACTTTCAGG                         TTCCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|110383230|gb|EC947588.1|EC947588
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|351022806|gb|FQ428715.1|FQ428715
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|110371329|gb|EC935267.1|EC935267
EST:     TCTT-CCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: TCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|71873088|gb|DT022143.1|DT022143
EST:     GTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: GTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|110706856|gb|EE082750.1|EE082750
EST:     CTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: CTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|110413595|gb|EC979387.1|EC979387
EST:     CCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: CCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|349825489|gb|FQ419406.1|FQ419406
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGACGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|349816020|gb|FQ403637.1|FQ403637
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|110707425|gb|EE083816.1|EE083816
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|110365491|gb|EC928562.1|EC928562
EST:     TCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: TCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|71873999|gb|DT023054.1|DT023054
EST:     AGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|110389914|gb|EC954788.1|EC954788
EST:     CCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: CCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|87584263|gb|DY473493.1|DY473493
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|37188354|gb|CF607703.1|CF607703
EST:     ATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: ATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|110708792|gb|EE086737.1|EE086737
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|110691642|gb|EE069976.1|EE069976
EST:     CTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: CTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|71865522|gb|DT014577.1|DT014577
EST:     GTAGCTTCTTCCC-ATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: GTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|351027831|gb|FQ448401.1|FQ448401
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|110715252|gb|EE093093.1|EE093093
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|37188715|gb|CF608064.1|CF608064
EST:     ATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: ATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|37190352|gb|CF609701.1|CF609701
EST:     ATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: ATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|71890777|gb|DT039832.1|DT039832
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|77586590|gb|DV222421.1|DV222421
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|110373629|gb|EC937883.1|EC937883
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|71875042|gb|DT024097.1|DT024097
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|33404943|gb|CF210570.1|CF210570
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|77586925|gb|DV222609.1|DV222609
EST:     GTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: GTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|30326958|gb|CD010220.1|CD010220
EST:     ATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAG
genomic: ATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|30251436|gb|CB969169.1|CB969169
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|351028650|gb|FQ446323.1|FQ446323
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|349827194|gb|FQ421467.1|FQ421467
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|110703310|gb|EE080042.1|EE080042
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|77582145|gb|DV220031.1|DV220031
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|110378157|gb|EC943276.1|EC943276
EST:     TTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: TTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|110692176|gb|EE071118.1|EE071118
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|110410603|gb|EC976291.1|EC976291
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
EST: gi|352781424|gb|FQ468268.1|FQ468268
EST:     AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGG                         TTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG
genomic: AGTAGCTTCTTCCCAATCTCTCTCTCCCCTCCAGAATGGTTACTTTCAGGgtaagtctat ... gggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttgggttttgacctgatctaatggggtttgttcgtttgtttgggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCG
                   atctaat  putative branch site (score: 3)
                   atctaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atttttctgtcccaacatatggatggaagtgggttttttttatttttttttgggttttgacctgatctaatggggtttgttcgtttgtttgggtgtgcagTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - cccaaca
- - - - - - - - - -tggatgg
- - - - - - - - - - - - - - gtgggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtttg