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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcattccccctctctatctctcttcttctctactagctctctctaacctttgatttttctcattttcatcagATTGGAAAGGGTATTTACATCGATGAAATCAAAGCCATGATCAACCACAAGCGCCATCGCCTCATCCTTAACATTTCCGATCTCCATGACTACCGCACTG

Basic information

species Vitis vinifera
transcript Vv10s0003g03080.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g03080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G08920.1 (Glycine max), 3'ss of exon 1
--------------gtaatcattccccctctctatctctcttcttctctactagctctctctaacctttgatttttctcatttt----catcagATTGGAAAGGGTATTTACATCGATGAAATCAAAGCCATGATCAACCACAAGCGCCATCGCCTCATCCTTAACATTTCCGATCTCCATGACTACCGC-ACTG
               |    |||| ||    || | | | || ||  || ||   |||   |  ||   |||||   || | ||    | | || |||||||||| || ||||| || ||||||||| || | |||||||||||||| || ||||||||| | ||||| |||||||||||  ||| |||| ||| 
gtatgtcccaaacattctgtattctcctctcctttttttttttttaccttctcattcttcatttccaacgatttcgttcgtgttaaatcgttagGTTGGAAAGGGCATATACATGGACGAAATCAAAACCCTAATCAACCACAAGCGTCACCGCCTCATCGTCAACATCTCCGATCTCCACAACTTCCGCGACT-

upper sequence: Vv10s0003g03080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G25980.1 (Glycine max), 3'ss of exon 1
-------gtaatcattccccctctctatctctcttcttctctactagctc-tctctaacctttgatttttctcattttcatcagATTGGAAAGGGTATTTACATCGATGAAATCAAAGCCATGATCAACCACAAGCGCCATCGCCTCATCCTTAACATTTCCGATCTCCATGACTACCGC-ACTG
         || |||||    |     | | | ||  | ||| ||   || | ||||||    || |||        |||| || | || ||||| || ||||| || ||||||||| || | ||||||| ||||||||| ||||| ||| | ||||| |||||||||||  ||| |||| ||| 
gtatgtcccaaacattctgtattctcgtttgtgttactttctccttcttcatttctaac----gagtttgtgttgaatcattagGTCGGGAAGGGCATATACATGGACGAAATCAAAACCCTAATCAACCTCAAGCGCCACCGCCTTATCGTCAACATCTCCGATCTCCACAACTTCCGCGACT-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctcttcttctctactagctctctctaacctttgatttttctcattttcatcagATTGGAAAGGGTATTTACATCGATGAAATCAAAGCCATGATCAACCACAAGCGCCATCGCCTCATCCTTAACATTTCCGATCTCCATGACTACCGCACTG
                             cctttgatttttctca  CT-rich tract
                                   atttttctcatttt  TA-rich tract