1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctgatgaagcctgtactcatggaatcaaatccagcttagcatgcatatacaatgatattatcgtgtacctcacccgtatgtatgtaccgtgtgttttcagGTATCCTTAAAGTTTGTATACTTGGCTATTGGTTCGGGCATCGCTTCTCTCCTAC
species | Vitis vinifera |
transcript | Vv10s0003g02540.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tatacaatgatattatcgtgtacctcacccgtatgtatgtaccgtgtgttttcagGTATCCTTAAAGTTTGTATACTTGGCTATTGGTTCGGGCATCGCTTCTCTCCTAC
acctcac putative branch site (score: 3)
tgttttc putative PPT
aatgatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgatgaagcctgtactcatggaatcaaatccagcttagcatgcatatacaatgatattatcgtgtacctcacccgtatgtatgtaccgtgtgttttcagGTATCCTTAAAGTTTGTATACTTGGCTATTGGTTCGGGCATCGCTTCTCTCCTAC
ctgatga
- - - - gcctgta
- - - - - - - -ctcatgg
- - - - - - - - - - - - - aaatcca
- - - - - - - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtac