Sequence
atgc intronic sequence ATGC exonic sequencegtacgatttcatgtatatcaagtcatattcaagataattgttatggcagtgagcagagggataatggggttctttttcttaccttcccttttgatagGATTATGTTCCCACAGTTTTCGACAACTTCAGTGCTAACGTGGTTGTGGATGGTAGCACAGTCAACCTTGGCCTATGGGACACTGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g00570.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G41730.1 (Glycine max), 3'ss of exon 2
gtacgatttcatgtatatcaagtcatattcaagataattgttatggcagtgagcagagggataatggggttctttttcttaccttcccttttg-----atagGATTATGTTCCCACAGTTTTCGACAACTTCAGTGCTAACGTGGTTGTGGATGGTAGCACAGTCAACCTTGGCCTATGGGACACTGCAG------------
|| || || || | | | ||| | | || | || || | | | ||| ||| | | | |||||| ||||| || |||||||| |||||||||| ||| || ||||| | ||||| |||||||| || || || ||||||||||||| |
--------------gtacgaaaacacat--gatgttttagttgtttgaatgtgttaagttttagtttg--tgtttaacttgctcttgttggaaaaaaaatagGACTATGTGCCTACAGTTTTTGACAACTTCAATGCAAATGTGGTGATTGATGGAAGCACAGTTAATCTAGGATTATGGGACACTGCTGGTAAGTACTTTC
upper sequence: Vv10s0003g00570.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ09765 (Selaginella moellendorffii), 3'ss of exon 1
gtacgatttcatgtatatcaagtcatattcaagataattgttatggcagtgagcagagggataatggggttctttttcttaccttcccttttgatagGATTATGTTCCCACAGTTTTCGACAACTTCAGTGCTAACGTGGTTGTGGATGGTAGCACAGTCAACCTTGGCCTATGGGACACTGCAG
|||| | ||| || | ||| |||| || | | | ||||||| |||||||| ||||| || |||||||| || || |||||||| ||||| | ||| ||||||||||| || ||||||||||| |
----------------------------gtgagatt-tcgttttgttctttcctttttctctaact---ctcttgggctgggatcgttcatcaacagGATTACGTTCCCACTGTTTTTGATAACTTCAGCGCCAATGTGGTTGTCGATGGCAACACTGTCAACCTTGGGCTCTGGGACACTGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atggcagtgagcagagggataatggggttctttttcttaccttcccttttgatagGATTATGTTCCCACAGTTTTCGACAACTTCAGTGCTAACGTGGTTGTGGATGGTAGCACAGTCAACCTTGGCCTATGGGACACTGCAG
ttcttac putative branch site (score: 2)
ttctttttcttacctt CT-rich tract
tttttctta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgatttcatgtatatcaagtcatattcaagataattgttatggcagtgagcagagggataatggggttctttttcttaccttcccttttgatagGATTATGTTCCCACAGTTTTCGACAACTTCAGTGCTAACGTGGTTGTGGATGGTAGCACAGTCAACCTTGGCCTATGGGACACTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG