1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cgcgcccccacgcgccggcgcgtgagattcaaccgccggccggaaaattgcgcgtggcctgcgcgtggctgctcttttggtgctggtgccttcacaaaagTTGGAGATCTCCTCCAGGCGCTCCTTCTGGTATGGTCGGTGTCGGAAAAATAGGTCGCCGGGAAATTTCGCCGGAAAATTTCGCCGGAAAATTTGCCAGC
species | Vitis vinifera |
transcript | Vv10s0003g00270.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
aattgcgcgtggcctgcgcgtggctgctcttttggtgctggtgccttcacaaaagTTGGAGATCTCCTCCAGGCGCTCCTTCTGGTATGGTCGGTGTCGGAAAAATAGGTCGCCGGGAAATTTCGCCGGAAAATTTCGCCGGAAAATTTGCCAGC
tgccttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcgcccccacgcgccggcgcgtgagattcaaccgccggccggaaaattgcgcgtggcctgcgcgtggctgctcttttggtgctggtgccttcacaaaagTTGGAGATCTCCTCCAGGCGCTCCTTCTGGTATGGTCGGTGTCGGAAAAATAGGTCGCCGGGAAATTTCGCCGGAAAATTTCGCCGGAAAATTTGCCAGC
- - cccccac
- - - - - - cgccggc
- - - - - - - - -gcgcgtg
- - - - - - - - - - - - - -ttcaacc
- - - - - - - - - - - - - - - - - gccggcc
- - - - - - - - - - - - - - - - - - - - -ggaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgctgg