Sequence
atgc intronic sequence ATGC exonic sequencegtactcctgttagtctaattgttcatcttcctgacgttcttatcttttactcttgtttacatttgtgttgattttttagttattgaatgcagagaaactaatacatattcacaatgtagCCTCTTCTTGCATATGGTCTGAGTAGCTCAAGGCGTGCTCCAGATGCCATCCACCCGTGAGTATTTCATTTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00360.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G379686_T01 (Zea mays), 3'ss of exon 3
gtactcctgttagtctaattgttcatcttcctgacgttcttatcttttactcttgtttacatttgtgttgattttttagttattgaatgcagagaaactaatacatattcacaatgtagCCTCTTCTTGCATATGGTCTGAGTAGCTCAAGGCGTGCTCCAGATGCCATCCACCCGTGAGTATTTCATTTCAG
|| | || | | | | | | | || | | | |||| || | | | ||||| | ||| | || |||||||||| |||||| |||| |||||||| |||||||||||||| | |||||
--------------------gtaagtttttttcgtatgccagttgatgtatatacctttcctctctgtttcattaccaagaacaaagaatcttagggctaattgttcatcaactttcagGCTCTTCTTGCTTATGGTTTGAGCAGCTCAAGACGTGCTCCAGATGCTCTACACCC------------------ atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgttgattttttagttattgaatgcagagaaactaatacatattcacaatgtagCCTCTTCTTGCATATGGTCTGAGTAGCTCAAGGCGTGCTCCAGATGCCATCCACCCGTGAGTATTTCATTTCAG
aactaat putative branch site (score: 2)
attttttagttattga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactcctgttagtctaattgttcatcttcctgacgttcttatcttttactcttgtttacatttgtgttgattttttagttattgaatgcagagaaactaatacatattcacaatgtagCCTCTTCTTGCATATGGTCTGAGTAGCTCAAGGCGTGCTCCAGATGCCATCCACCCGTGAGTATTTCATTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG