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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcatagttttgtctcatgtattttttttcctgttttactcatgaagatgtgggtagttttaactaatagatgagacatttttcatgcagCAAAAGGAGCTGATGCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCTGTGG

Basic information

species Vitis vinifera
transcript Vv09s0054g00030.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00030.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S28_10V6.2 (Physcomitrella patens), 3'ss of exon 1
---------gtactcatagttttgtctcatgtattttttttcctgttttactcatgaagatgtgggtagttttaactaatagatgagacatttttcatgcagCAAAAGGAGCTGATGCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCTGTGG
          |  |||  |  |  | | |   |  ||| | | |||| | |||  |    ||   |   | |||| || |     |  | | | |  | ||| ||||||| |||||     ||||    ||||| ||||||||||||||||| |||||||| ||||||   || ||| | ||| | ||||| ||| ||||
attcaggtcattgtcaaggcgtgatgtaactgacgtttctccttgttct-ctcccggcactgaatgccttcttaa-tattgtggcatccttctcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactcatgaagatgtgggtagttttaactaatagatgagacatttttcatgcagCAAAAGGAGCTGATGCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCTGTGG
                          aactaat  putative branch site (score: 2)
                                         catttttc  putative PPT
                   tagttttaactaata  TA-rich tract