1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgtgcatttgttccatttggcattgagaatgtgtaatatgtctaagtaccttactcttaagtcatttcccttactaaagtatgtgtggtttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG
species | Vitis vinifera |
transcript | Vv09s0018g01780.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|28965852|gb|CB344885.1|CB344885
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGAATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|32271352|gb|CD720511.1|CD720511
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|351024111|gb|FQ423534.1|FQ423534
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|351031377|gb|FQ445402.1|FQ445402
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|34542620|gb|CF510852.1|CF510852
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|349823504|gb|FQ414914.1|FQ414914
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|32248427|gb|CD714246.1|CD714246
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|351015119|gb|FQ444408.1|FQ444408
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|351022170|gb|FQ438755.1|FQ438755
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|110390868|gb|EC955807.1|EC955807
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|26262317|gb|CA813380.1|CA813380
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|294965939|gb|GW839278.1|GW839278
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGCGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|32268834|gb|CD717993.1|CD717993
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|29784391|gb|CB345050.2|CB345050
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|32269676|gb|CD718835.1|CD718835
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|110383897|gb|EC948302.1|EC948302
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCEST: gi|110687744|gb|EE065504.1|EE065504
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
EST: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAG GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
genomic: GTCTCCTTTGGATGGGATTTCCATCCTCCTTGTGTTCCTCTTAAGGGAAGgtatgctaat ... ttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGC
agtaccttactcttaagtcatttcccttactaaagtatgtgtggtttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG
tactaaa putative branch site (score: 1)
tttgctttc putative PPT
ttactaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgcatttgttccatttggcattgagaatgtgtaatatgtctaagtaccttactcttaagtcatttcccttactaaagtatgtgtggtttgctttcagGCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - gcatttg
- - - - - - -ccatttg
- - - - - - - - - - - - - -gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgtg