1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacgtgaaaatattagtcttgtaggggtagatggtgttgttgggatgattacatatgtgctagatttggggttcttattcttttttttttcttttggttgcagAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCATTGAAAGAAGAAGAG
species | Vitis vinifera |
transcript | Vv09s0018g00240.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCG AAGAAGGAGGTGCAGGA-GATTTTACAGGGTTGGGGTTGAAGGTCGTCTCAEST: gi|349810369|gb|FQ401815.1|FQ401815
genomic: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCGgtacgtgaaa ... ttggttgcagAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
EST: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCG AAGAAGGAGGTGCAGGA-GATTTTACAGGGTTGGGGTTGAAGGTCGTCTCAEST: gi|294967229|gb|GW840104.1|GW840104
genomic: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCGgtacgtgaaa ... ttggttgcagAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
EST: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCG AAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCAEST: gi|161712086|gb|FC061458.1|FC061458
genomic: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCGgtacgtgaaa ... ttggttgcagAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
EST: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCG AAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCAEST: gi|161706799|gb|FC055509.1|FC055509
genomic: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCGgtacgtgaaa ... ttggttgcagAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
EST: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCG AAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCAEST: gi|351054947|gb|FQ440286.1|FQ440286
genomic: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCGgtacgtgaaa ... ttggttgcagAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
EST: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCG AAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
genomic: CTTCATTGGATCTTAATGCTAATCCTCTTCGGCTTTTCGATGATACTCCGgtacgtgaaa ... ttggttgcagAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCA
ttacatatgtgctagatttggggttcttattcttttttttttcttttggttgcagAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCATTGAAAGAAGAAGAG
ttcttattcttttttt CT-rich tract
ttcttattcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgaaaatattagtcttgtaggggtagatggtgttgttgggatgattacatatgtgctagatttggggttcttattcttttttttttcttttggttgcagAAGAAGGAGGTGCAGGATGATTTTACAGGGTTGGGGTTGAAGGTCGTCTCATTGAAAGAAGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG