Sequence
atgc intronic sequence ATGC exonic sequence...aaatttattttttactaccactactattactgctgctgctgctgctactacaacttattttattttttgttcattaaaatttatttcattgttgccacagGTTGAGCTTGCAGAACGTCTTGTGTCTTGTTCTTTTGCTGATCGGGTCTTCTTCTCAAACTCTGGAACAGAAGCAAATGAAGCTGCTATCAAATTTGCAA
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110703763|gb|EE080893.1|EE080893EST: AAGCCAACACTCTCACTCATGTCAGCAACATGTTCTACTCCATTCCTCAA GTTGAGCTTGCAGAACGTCTTGTGTCTTGTTCTTTTGCTGATCGGGTCTTC
genomic: AAGCCAACACTCTCACTCATGTCAGCAACATGTTCTACTCCATTCCTCAGgtgatccttt ... gttgccacagGTTGAGCTTGCAGAACGTCTTGTGTCTTGTTCTTTTGCTGATCGGGTCTTC
EST:
gi|110380149|gb|EC945394.1|EC945394EST: AAGCCAACACTCTCACTCATGTCAGCAACATGTTCTACTCCATTCCTCAG GTTGAGCTTGCAGAACGTCTTGTGTCTTGTTCTTTTGCTGATCGGGTCTTC
genomic: AAGCCAACACTCTCACTCATGTCAGCAACATGTTCTACTCCATTCCTCAGgtgatccttt ... gttgccacagGTTGAGCTTGCAGAACGTCTTGTGTCTTGTTCTTTTGCTGATCGGGTCTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactacaacttattttattttttgttcattaaaatttatttcattgttgccacagGTTGAGCTTGCAGAACGTCTTGTGTCTTGTTCTTTTGCTGATCGGGTCTTCTTCTCAAACTCTGGAACAGAAGCAAATGAAGCTGCTATCAAATTTGCAA
aacttattttattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaatttattttttactaccactactattactgctgctgctgctgctactacaacttattttattttttgttcattaaaatttatttcattgttgccacagGTTGAGCTTGCAGAACGTCTTGTGTCTTGTTCTTTTGCTGATCGGGTCTTCTTCTCAAACTCTGGAACAGAAGCAAATGAAGCTGCTATCAAATTTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - ctaccac
- - - - - - - - - - - - - - actgctg
- - - - - - - - - - - - - - - -gctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attaaaa