Sequence
atgc intronic sequence ATGC exonic sequence...cacatcagataccaactatgttttagagggctctattgtaattgcaggagctcggagacggccttggttgattcttcgggtggggtttattttgtgccagCATTCAATGGATTGTTTGCTCCATGGTGCCGTGATGATGCACGTGGGGTTTGCATTGGGATCACAAGATTTACAAACAAGTCTCACATTGCTCGAGCTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g07640.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G22870.1 (Glycine max), 3'ss of exon 1
cacatcagataccaactatgttttagagggctctattgtaattgcaggagctcggagacggccttggttgattcttcgggtggggtttattttgtgccagCATTCAATGGATTGTTTGCTCCATGGTGCCGTGATGATGCACGTGGGGTTTGCATTGGGATCACAAGATTTACAAACAAGTCTCACATTGCTCGAGCTGT----------------------
||| ||||| ||||| || |||||||| ||||| || ||||| ||||||| ||| |||||||||||||||||||
-----------------------------------------------------------------------------------------------------------------------------gtggcgtgaggatgctcgcggggtttgtattggaataacaagGTTTACAAGCAAAGCTCACATTGCTCGAGCTGTGCTCGAGAGCATGTGTTTCCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggagctcggagacggccttggttgattcttcgggtggggtttattttgtgccagCATTCAATGGATTGTTTGCTCCATGGTGCCGTGATGATGCACGTGGGGTTTGCATTGGGATCACAAGATTTACAAACAAGTCTCACATTGCTCGAGCTGT
ggttgat putative branch site (score: 5)
tttatttt putative PPT
tttattttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cacatcagataccaactatgttttagagggctctattgtaattgcaggagctcggagacggccttggttgattcttcgggtggggtttattttgtgccagCATTCAATGGATTGTTTGCTCCATGGTGCCGTGATGATGCACGTGGGGTTTGCATTGGGATCACAAGATTTACAAACAAGTCTCACATTGCTCGAGCTGT
cacatca
- - - - - -ccaacta
- - - - - - - - - - - - - - - - - - - - - tgcagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtggg